Alternatives and similar repositories for Post-QC

Users that are interested in Post-QC are comparing it to the libraries listed below

• adhikari-statgen-lab / gwas-power
  R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…
  ☆22Updated 7 years ago
• qlu-lab / X-Wing
  Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations
  ☆16Updated last year
• daviddaiweizhang / fraposa
  ☆17Updated 2 years ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆16Updated 3 years ago
• jianyangqt / osca
  ☆20Updated 2 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated 2 years ago
• AlexandrovLab / EnsembleVariantCallingPipeline
  The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…
  ☆14Updated 4 months ago
• atgu / hgdp_tgp
  ☆47Updated 5 months ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆14Updated last month
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆37Updated 2 years ago
• heatherjzhou / PCAForQTL
  PCA for hidden variable inference in QTL mapping: an R package and tutorial
  ☆20Updated 2 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• statgen / topmed_variant_calling
  ☆24Updated last year
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆20Updated 4 months ago
• mskilab-org / gTrack
  R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
  ☆17Updated 11 months ago
• sunnyeesl / BigLD
  ☆21Updated 3 years ago
• gymreklab / mutea-autosomal
  Mutation rate analysis of autosomal loci
  ☆15Updated 5 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 3 years ago
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆14Updated 7 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆41Updated last year
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 2 months ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆21Updated 3 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated 3 weeks ago
• mcveanlab / TreeWAS
  ☆16Updated 8 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆33Updated 6 months ago
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆33Updated 3 years ago
• joepickrell / 1000-genomes-genetic-maps
  Genetic maps interpolated to sites in the 1000 Genomes project
  ☆51Updated 10 years ago
• sriramlab / SCOPE
  Scalable population structure inference
  ☆18Updated 3 years ago