Atkinson-Lab / Post-QCLinks
Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.
☆11Updated 6 years ago
Alternatives and similar repositories for Post-QC
Users that are interested in Post-QC are comparing it to the libraries listed below
Sorting:
- Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations☆16Updated last year
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆21Updated 7 years ago
- ☆16Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- ☆46Updated 4 months ago
- PRS pipeline using PRS_CS☆14Updated last month
- ☆20Updated 2 years ago
- Generalized linear Mixed Model Association Tests☆44Updated this week
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated 3 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Updated 5 months ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆19Updated 2 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- ☆16Updated 8 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated last month
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Updated 11 months ago
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Updated 3 years ago
- Scripts used for generating Neale Lab UKB results☆20Updated 3 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆15Updated 3 years ago
- ☆21Updated 3 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- ☆24Updated 11 months ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆12Updated 11 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Updated 8 months ago
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated last year
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆42Updated last month