tskit-dev / tsinferLinks
Infer a tree sequence from genetic variation data.
☆59Updated 2 months ago
Alternatives and similar repositories for tsinfer
Users that are interested in tsinfer are comparing it to the libraries listed below
Sorting:
- Tools for dealing with tree sequences coming to and from SLiM.☆27Updated 2 weeks ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Sampling and inference of genealogies with recombination☆29Updated 8 months ago
- Drawing functions for Demes demographic models☆20Updated 10 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆54Updated 9 years ago
- The integrated Sequentially Markovian Coalescent☆13Updated last week
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- ☆29Updated 2 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆57Updated 2 years ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- A set of tutorials for msprime and tskit.☆20Updated 3 weeks ago
- feature-based deep learning for the identification of selective sweeps☆56Updated last month
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 2 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- R package for pedigree inference based on SNP data☆26Updated 11 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated last month
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- GONE: Scripts, programs and an example data set☆47Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆60Updated last month
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆42Updated last month
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Quantifying Introgression via Branch Lengths☆52Updated 2 years ago
- Population genetic simulations in R 🌍☆59Updated this week
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Implementation of the multiple sequential markovian coalescent☆87Updated last year