stschiff / msmc-tools
Tools and Utilities for msmc and msmc2
☆47Updated last year
Alternatives and similar repositories for msmc-tools:
Users that are interested in msmc-tools are comparing it to the libraries listed below
- Infer demographic history with the Moran model☆47Updated last month
- Tutorial on using popular tools for learning about population history☆50Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆24Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆35Updated last year
- feature-based deep learning for the identification of selective sweeps☆54Updated 3 weeks ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- GONE: Scripts, programs and an example data set☆46Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated this week
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- A pipeline that accepts a VCF file to run through Admixture☆60Updated 3 months ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- Quantifying Introgression via Branch Lengths☆50Updated 2 years ago