stschiff / msmc-tools
Tools and Utilities for msmc and msmc2
☆47Updated last year
Alternatives and similar repositories for msmc-tools:
Users that are interested in msmc-tools are comparing it to the libraries listed below
- Infer demographic history with the Moran model☆47Updated 10 months ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- ☆24Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆44Updated 6 months ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 3 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆57Updated last month
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 5 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ☆43Updated 8 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- General purpose population genetics software☆12Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆27Updated last week
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 10 months ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Tutorials on evolutionary genomics☆42Updated 2 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- ☆22Updated 10 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- A tool for evaluate long-read de novo assembly results☆43Updated 5 months ago