lntran26 / donni
machine learning applications for dadi
☆15Updated 3 months ago
Alternatives and similar repositories for donni:
Users that are interested in donni are comparing it to the libraries listed below
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- Automated and distributed population genetic model inference from allele frequency spectra☆16Updated last month
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆11Updated last month
- Sampling and inference of genealogies with recombination☆29Updated 7 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- An R package to detect selection in biological pathways☆14Updated last year
- The MafFilter genome alignment processor☆18Updated this week
- ☆20Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 5 months ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆16Updated 2 months ago
- ☆13Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆16Updated last week
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- ☆23Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆9Updated 7 months ago