machine learning applications for dadi
☆17Jan 23, 2025Updated last year
Alternatives and similar repositories for donni
Users that are interested in donni are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated 3 months ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆24Jun 17, 2025Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 5 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Drawing functions for Demes demographic models☆25Updated this week
- ☆13Aug 18, 2023Updated 2 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- ☆13Jul 8, 2026Updated 2 weeks ago
- Rescale genetic polymorphism data to match a common sample size.☆16Nov 4, 2021Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- an R script for generating color combinations from Senzo Wada's "A Dictionary of Color Combinations"☆10Mar 18, 2019Updated 7 years ago
- Topology weighting from unphased genotypes of any ploidy☆29Jun 17, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Sep 5, 2025Updated 10 months ago
- ☆21Jan 11, 2024Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated 2 months ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 3 months ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 4 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Jun 30, 2026Updated 3 weeks ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated last year
- A set of tools for modelling ancestry patterns along the genome.☆24Jul 17, 2026Updated last week
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- Fast inference of fine-scale recombination rates based on fused-LASSO☆64Feb 10, 2026Updated 5 months ago
- Tools for describing and manipulating demographic models.☆19Mar 30, 2026Updated 3 months ago
- ☆35Nov 11, 2025Updated 8 months ago
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- PHYLIP package starting with version 4.0a☆20Updated this week
- ☆57Jun 12, 2025Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆19Jun 24, 2024Updated 2 years ago
- Genetic Algorithm for Demographic Model Analysis☆57Feb 3, 2026Updated 5 months ago
- ☆13May 13, 2024Updated 2 years ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Jan 5, 2026Updated 6 months ago