sgkit-dev / sgkitLinks
Scalable genetics toolkit
☆263Updated last month
Alternatives and similar repositories for sgkit
Users that are interested in sgkit are comparing it to the libraries listed below
Sorting:
- A Python package for exploring and analysing genetic variation data☆299Updated 3 weeks ago
- A declarative interactive genomics visualization library for Python.☆229Updated 2 weeks ago
- The uncompromising Snakemake code formatter☆176Updated last month
- This is the development home of the Snakemake wrapper repository, see☆232Updated this week
- Performant Pythonic GenomicRanges☆483Updated 5 months ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated 3 weeks ago
- A template for standard compliant snakemake-workflows☆111Updated 3 weeks ago
- Genomic interval operations on Pandas DataFrames☆184Updated last week
- A cool place to store your Hi-C☆223Updated this week
- genes and genomes at your fingertips☆398Updated 3 months ago
- A simple Snakemake profile for Slurm without --cluster-config☆161Updated last year
- Cookiecutter for snakemake slurm profile☆132Updated last year
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- cython + htslib == fast VCF and BCF processing☆411Updated 11 months ago
- Jupyter notebook based genomic data visualization toolkit.☆246Updated 4 months ago
- Utilities for building and managing bioconda recipes☆103Updated last week
- Population-scale Ancestral Recombination Graph (ARG) library☆168Updated this week
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆322Updated 5 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 2 weeks ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆97Updated last week
- Fast, flexible and extensible genome browser.☆332Updated last week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- Simple test framework for Nextflow pipelines☆168Updated 2 months ago
- Oxbow makes genomic data ready for high-performance analytics.☆120Updated last week
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆285Updated 8 months ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆243Updated 5 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆338Updated 2 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆374Updated 2 months ago
- Warp Analysis Research Pipelines☆215Updated this week
- Python package with helper tools for the nf-core community.☆265Updated this week