fgvieira / ngsF

Related projects ⓘ

Alternatives and complementary repositories for ngsF

• popgenmethods / LDhelmet
  Software package for estimating fine-scale recombination rate.
  ☆13Updated 3 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• baoxingsong / genomeAlignment
  Compare different genome alignment tools using a wide range of genomes with different complexities.
  ☆13Updated last year
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 3 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated last month
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• avaughn271 / AdmixtureBayes
  ☆18Updated last month
• bwringe / hybriddetective
  ☆13Updated last year
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆17Updated 5 years ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆15Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆27Updated last year
• lstevison / vcf-conversion-tools
  Tools to convert to and from vcf format
  ☆14Updated 7 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• singhal / popgen_tutorial
  ☆11Updated 5 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated last month
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆14Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆27Updated last year
• grenaud / vgan
  Suite of tools for pangenomics built using vg
  ☆17Updated this week
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 2 months ago
• mrvollger / NucFreq
  ☆32Updated 8 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆15Updated 4 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆15Updated 4 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆23Updated 3 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated last week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 2 months ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated last year
• maojanlin / biastools
  ☆17Updated 2 weeks ago