jradrion / TEFLoNLinks
TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
☆13Updated 4 years ago
Alternatives and similar repositories for TEFLoN
Users that are interested in TEFLoN are comparing it to the libraries listed below
Sorting:
- The MafFilter genome alignment processor☆19Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 10 months ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 6 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆18Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- FastK based version of Merqury☆30Updated 3 months ago
- ☆31Updated 6 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 3 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 8 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- ☆38Updated 2 months ago
- SV calling for diploid assemblies☆30Updated last year
- WinPCA. A package for windowed principal component analysis.☆44Updated last month
- ☆44Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago