jradrion / TEFLoNLinks
TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
☆13Updated 4 years ago
Alternatives and similar repositories for TEFLoN
Users that are interested in TEFLoN are comparing it to the libraries listed below
Sorting:
- The MafFilter genome alignment processor☆18Updated last month
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆30Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated last month
- parallelLastz: Running Lastz in parallel☆16Updated 9 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Software package for estimating fine-scale recombination rate.☆14Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- ☆12Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆13Updated 2 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- A box of genomics tools☆21Updated 4 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- Deleterious mutation prediction pipeline☆13Updated 6 months ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated 2 years ago