tskit-dev / tutorials
A set of tutorials for msprime and tskit.
☆18Updated last month
Related projects ⓘ
Alternatives and complementary repositories for tutorials
- Tools for dealing with tree sequences coming to and from SLiM.☆27Updated 3 months ago
- Sampling and inference of genealogies with recombination☆24Updated last month
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Population-wide Deletion Calling☆34Updated 2 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆24Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆45Updated last year
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Sweep Inference Framework (controlling for correlation)☆28Updated 4 months ago
- Software for estimating genome-wide genealogies for thousands of samples☆28Updated last month
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Drawing functions for Demes demographic models☆19Updated 3 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated 2 months ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- ☆53Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆39Updated last year
- Software for detecting introgression using supervised machine learning☆18Updated last year
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆42Updated 10 months ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- R-package: Calculation of haplotype blocks and libraries☆27Updated 7 months ago
- Graph-aware Retrieval of Selective Sweeps☆20Updated last month
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- ☆18Updated 7 months ago
- Automated and distributed population genetic model inference from allele frequency spectra☆14Updated this week
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago