tskit-dev / tutorialsLinks
A set of tutorials for msprime and tskit.
☆20Updated last month
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Tools for dealing with tree sequences coming to and from SLiM.☆28Updated last month
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- Sampling and inference of genealogies with recombination☆30Updated last week
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated last month
- Tools and Utilities for msmc and msmc2☆47Updated last year
- R-package: Calculation of haplotype blocks and libraries☆30Updated 4 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 11 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 9 months ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- ☆20Updated 8 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆21Updated 4 years ago
- Infer demographic history with the Moran model☆47Updated last week
- ☆23Updated last year
- ☆24Updated 8 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆16Updated last year
- Drawing functions for Demes demographic models☆21Updated 10 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆15Updated 9 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- Tools to convert to and from vcf format☆14Updated 8 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- ☆43Updated 3 months ago