chienchi / amplicon_coverage_plotLinks
interactive barplot for amplicon sequencing
☆13Updated last year
Alternatives and similar repositories for amplicon_coverage_plot
Users that are interested in amplicon_coverage_plot are comparing it to the libraries listed below
Sorting:
- Variant call verification☆16Updated 8 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- Basecalling configuration prediction through FASTQ files☆32Updated 2 months ago
- Read contamination removal☆25Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- ☆11Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Updated last week
- UPHL's Reference Free Pipeline☆27Updated 3 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- ☆14Updated 4 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆15Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Updated 4 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Updated last week
- Visualize microbial evolution at the SNP level!☆15Updated 5 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆12Updated last month
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Updated last month
- A repo with just adapter sequences☆15Updated 6 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year
- Genome size estimation from long read overlaps☆80Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆24Updated this week
- Generate basic stats for an assembly.☆13Updated 2 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22Updated last year