chienchi / amplicon_coverage_plot
interactive barplot for amplicon sequencing
☆13Updated 4 months ago
Alternatives and similar repositories for amplicon_coverage_plot:
Users that are interested in amplicon_coverage_plot are comparing it to the libraries listed below
- software to identify primers that can distinguish genomes☆21Updated 2 months ago
- Systematic resistome analysis☆10Updated 5 years ago
- ☆9Updated 2 years ago
- Variant call verification☆16Updated 3 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 5 months ago
- A repo with just adapter sequences☆14Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated 8 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated this week
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 9 months ago
- Read contamination removal☆25Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Library of sketching functions used by PopPUNK☆30Updated 2 weeks ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Influenza genome analysis Nextflow workflow☆22Updated last week
- Remove human reads from a sequencing run☆40Updated 6 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 6 months ago
- Genome size estimation from long read overlaps☆52Updated this week
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated 7 months ago
- mGEMS Genomic epidemiology with mixed samples☆16Updated 7 months ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆10Updated 4 months ago
- Fast viral consensus genome reconstruction☆22Updated 4 months ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 10 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year