luntergroup / smcsmcLinks
Demographic inference from whole genomes
☆13Updated 3 years ago
Alternatives and similar repositories for smcsmc
Users that are interested in smcsmc are comparing it to the libraries listed below
Sorting:
- The MafFilter genome alignment processor☆19Updated 5 months ago
- machine learning applications for dadi☆15Updated 9 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- ☆15Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- transposable element typing pipeline☆19Updated last year
- ☆15Updated 7 years ago
- ☆20Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- ☆26Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆31Updated 4 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 6 months ago
- ☆20Updated last year
- SNP genotyping in polyploids☆17Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Differential k-mer analysis☆37Updated last year
- Consensus genome annotation using OMA☆27Updated 4 months ago
- Long read QC, assembly and scaffolding pipeline☆13Updated 5 years ago