Alternatives and similar repositories for smcsmc

Users that are interested in smcsmc are comparing it to the libraries listed below

• lntran26 / donni
  machine learning applications for dadi
  ☆16Updated 9 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 6 months ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆15Updated 2 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 5 months ago
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• malthesr / winsfs
  Site frequency spectrum estimation based on window expectation-maximisation algorithm
  ☆14Updated 2 years ago
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 11 months ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 4 years ago
• tskit-dev / tsdate
  Infer the age of ancestral nodes in a tree sequence.
  ☆23Updated last month
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 2 months ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆27Updated 6 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 5 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated last month
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆16Updated 7 months ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 5 years ago
• xin-huang / dadi-cli
  Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
  ☆18Updated 3 months ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• SR-Martin / alvis
  ☆20Updated last year
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆20Updated 5 years ago
• bwringe / hybriddetective
  ☆15Updated 2 years ago