Alternatives and similar repositories for geonomics:

Users that are interested in geonomics are comparing it to the libraries listed below

• ropensci / onekp
  Access sequences from the 1000 Plant Initiative (1KP)
  ☆13Updated last year
• MaikeMorrison / FSTruct
  ☆13Updated last year
• vsbuffalo / slimflow
  ☆13Updated 3 months ago
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 4 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 5 months ago
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated 11 months ago
• Rosemeis / emu
  EM-PCA for Ultra-low Coverage Sequencing Data
  ☆17Updated last month
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆15Updated 2 years ago
• duchene / phylomad
  ☆19Updated 8 months ago
• TheWangLab / algatr
  A Landscape Genomic Analysis Toolkit in R
  ☆18Updated last month
• TBooker / PicMin
  ☆11Updated last year
• computations / root_digger
  A tool to root phylogenies
  ☆19Updated 6 months ago
• BenoitMorel / Asteroid
  ☆11Updated last year
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆16Updated 4 years ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 2 weeks ago
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆20Updated 10 months ago
• bodkan / demografr
  Fast and simple simulation-based population genetic inference in R
  ☆27Updated this week
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆33Updated 7 years ago
• hannesbecher / shiny-k-mers
  Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…
  ☆13Updated 6 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• danlwarren / Evolution-2019-Phylogenetic-Methods-Workshop
  This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…
  ☆13Updated 5 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 11 months ago
• lliu1871 / mp-est
  MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function
  ☆12Updated last year
• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆11Updated 9 months ago
• popsim-consortium / demes-python
  Tools for describing and manipulating demographic models.
  ☆19Updated last week
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 6 years ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 3 years ago