ComparativeGenomicsToolkit / mafToolsLinks
Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
☆11Updated 5 months ago
Alternatives and similar repositories for mafTools
Users that are interested in mafTools are comparing it to the libraries listed below
Sorting:
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- ☆12Updated 5 years ago
- ☆10Updated 5 years ago
- ☆15Updated 2 years ago
- ☆16Updated 3 years ago
- ☆12Updated 3 months ago
- defusion☆14Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Hidden Markov Model based Copy number caller☆20Updated this week
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- ☆16Updated 7 years ago
- This is the Haplotypo repository☆22Updated last year
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- ☆13Updated 2 years ago
- ☆20Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆16Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago