Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
☆11Jul 8, 2025Updated 9 months ago
Alternatives and similar repositories for mafTools
Users that are interested in mafTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Jun 17, 2022Updated 3 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Jul 5, 2025Updated 9 months ago
- ☆187May 22, 2025Updated 10 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- Construct a Physical Map from Linked Reads☆18Apr 1, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- ☆10May 31, 2022Updated 3 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Updated this week
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated last year
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆18May 19, 2022Updated 3 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Handy scripts for routine bioinformatic analysis☆20May 5, 2025Updated 11 months ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 3 months ago
- Immuological gene typing and annotation for genome assembly☆38Mar 13, 2025Updated last year
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year