Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
☆11Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for mafTools
Users that are interested in mafTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- ☆190May 22, 2025Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆39Jul 5, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees☆13Mar 26, 2019Updated 7 years ago
- eHive pipeline to build pairwise Oxford plots☆12Aug 11, 2019Updated 7 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- GBWT-based handle graph☆37Updated this week
- Pong built with Pygame and Leap Motion. An OpenLeap project started by @astagi.☆10Jan 29, 2018Updated 8 years ago
- Find locations of k-mers☆13Dec 6, 2025Updated 10 months ago
- Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.☆10Apr 23, 2024Updated 2 years ago
- Construct a Physical Map from Linked Reads☆20Apr 1, 2026Updated 6 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 5 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Pangenome file formats based on SQLite☆16Updated this week
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- ☆10May 31, 2022Updated 4 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Dec 6, 2023Updated 2 years ago
- Fast and memory efficient partial order alignment with minipoa☆22Oct 16, 2026Updated last week
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 3 months ago
- ☆10Jun 13, 2020Updated 6 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- ☆10Jul 19, 2024Updated 2 years ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- ☆15Oct 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Nov 6, 2022Updated 3 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆18Sep 23, 2026Updated last month
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year