Site frequency spectrum estimation based on window expectation-maximisation algorithm
☆17May 19, 2023Updated 2 years ago
Alternatives and similar repositories for winsfs
Users that are interested in winsfs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 9 months ago
- WinPCA. A package for windowed principal component analysis.☆48Apr 2, 2026Updated 2 weeks ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last month
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- ☆21Dec 13, 2024Updated last year
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- simple program to rotate a circular sequence to start at a given position or string☆19Jul 9, 2023Updated 2 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments☆32Updated this week
- GONE: Scripts, programs and an example data set☆54Jul 20, 2025Updated 8 months ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11Aug 15, 2025Updated 8 months ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 10 months ago
- ☆15Apr 1, 2024Updated 2 years ago
- ☆46Mar 18, 2025Updated last year
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 10 months ago
- An R Package to build and simulate coalescent models☆20Apr 3, 2026Updated 2 weeks ago
- ☆21Oct 2, 2024Updated last year
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆41Updated this week
- high-performance BED-to-GTF converter written in Rust☆20Mar 19, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 10 months ago
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated 10 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 10 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆25Apr 11, 2026Updated last week
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆33Apr 1, 2026Updated 2 weeks ago