DecodeGenetics / popvcfLinks
Lossless VCF compression
☆20Updated 3 years ago
Alternatives and similar repositories for popvcf
Users that are interested in popvcf are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆23Updated 3 months ago
- Pan gGnome Viewer☆10Updated 2 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Detects human contamination in bam files☆16Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 11 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- ☆21Updated 9 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- ☆24Updated 3 weeks ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆12Updated last week
- ☆14Updated 2 years ago
- Identification of structural variations☆12Updated 3 years ago
- ☆15Updated 7 years ago
- ☆11Updated 2 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago