DecodeGenetics / popvcfLinks
Lossless VCF compression
☆21Updated 3 years ago
Alternatives and similar repositories for popvcf
Users that are interested in popvcf are comparing it to the libraries listed below
Sorting:
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Pan gGnome Viewer☆10Updated 6 months ago
- ☆21Updated last month
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- ☆24Updated 8 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 5 years ago
- ☆17Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 6 years ago
- ☆28Updated 9 months ago
- ☆14Updated 5 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago