popsim-consortium / stdpopsimLinks
A library of standard population genetic models
☆134Updated last month
Alternatives and similar repositories for stdpopsim
Users that are interested in stdpopsim are comparing it to the libraries listed below
Sorting:
- Programs to analyse NGS data for population genetics purposes☆175Updated 10 months ago
- Estimating Effective Migration Surfaces☆103Updated last year
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆138Updated 2 months ago
- Simulate genealogical trees and genomic sequence data using population genetic models☆193Updated last month
- Shiny apps for teaching Population Genetics☆65Updated 2 years ago
- A library for running k-mers based GWAS☆110Updated 8 months ago
- a bash pipeline for RAD sequencing☆55Updated 5 months ago
- Population genetic simulations in R 🌍☆59Updated last week
- A variational framework for inferring population structure from SNP genotype data.☆139Updated 2 years ago
- ☆83Updated last month
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆170Updated 2 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆119Updated 6 months ago
- simple examples of using supervised machine learning for population genetics inference☆38Updated 7 years ago
- ☆22Updated 6 years ago
- Haplotype based scans for selection☆130Updated this week
- Recovering genes from targeted sequence capture data☆126Updated 2 weeks ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆179Updated 2 weeks ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆87Updated 4 years ago
- Population-scale Ancestral Recombination Graph (ARG) library☆164Updated this week
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆102Updated 3 weeks ago
- Automatically exported from code.google.com/p/jmodeltest2☆80Updated 3 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆154Updated 11 months ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Infer a tree sequence from genetic variation data.☆59Updated this week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆100Updated last month
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆156Updated this week
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆175Updated 7 months ago
- Trinotate source code☆82Updated last year
- Methods for examining PCA locally along the genome.☆82Updated 11 months ago