A library of standard population genetic models
☆139Mar 18, 2026Updated this week
Alternatives and similar repositories for stdpopsim
Users that are interested in stdpopsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- Tools for describing and manipulating demographic models.☆19Updated this week
- Simulate ARGs and genomic sequence data using population genetic models☆210Mar 6, 2026Updated 2 weeks ago
- Population-scale Ancestral Recombination Graph (ARG) library☆178Mar 16, 2026Updated last week
- Population genetic simulations in R☆63Jan 28, 2026Updated last month
- Infer a tree sequence from genetic variation data.☆62Mar 16, 2026Updated last week
- Fast inference of fine-scale recombination rates based on fused-LASSO☆56Feb 10, 2026Updated last month
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Feb 7, 2026Updated last month
- Forward-time simulation in Python using fwdpp☆31Mar 3, 2026Updated 2 weeks ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆213Mar 16, 2026Updated last week
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- ☆12Sep 14, 2025Updated 6 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- ☆15Feb 28, 2026Updated 3 weeks ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Scalable genetics toolkit☆275Mar 2, 2026Updated 3 weeks ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 4 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Infer the age of ancestral nodes in a tree sequence.☆25Updated this week
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 4, 2026Updated 2 weeks ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 2 months ago
- ☆13Aug 18, 2023Updated 2 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- A Python package for exploring and analysing genetic variation data☆315Mar 1, 2026Updated 3 weeks ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated last year
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- Sampling and inference of genealogies with recombination☆53Mar 16, 2026Updated last week
- Population genetics notes☆696Jun 1, 2023Updated 2 years ago
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated last year
- feature-based deep learning for the identification of selective sweeps☆59Feb 7, 2026Updated last month
- Haplotype and population structure inference using neural networks.☆28Dec 5, 2024Updated last year
- ☆13Dec 3, 2024Updated last year
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Drawing functions for Demes demographic models☆25Mar 16, 2026Updated last week
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- Lecture Notes on Computational and Mathematical Population Genetics☆200May 5, 2021Updated 4 years ago