tothuhien / lsd2
A phylogeny dating method using least-squares algorithms and criteria
☆24Updated last year
Related projects: ⓘ
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆16Updated last year
- Analyzer of Gene and Species Trees☆10Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆29Updated 4 months ago
- spruceup☆19Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆51Updated 2 weeks ago
- Automatic Assembly For The Fungi☆19Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆41Updated 6 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆25Updated 11 months ago
- BEAV: Bacterial Element Annotation reVamped☆55Updated 2 weeks ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆21Updated 10 years ago
- Improvement of metagenome-assembled genomes☆48Updated 4 years ago
- ☆43Updated 2 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆22Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆50Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆41Updated 4 years ago
- Resources for Brown University's BIOL 1435 course.☆20Updated 4 months ago
- starfish: a modular toolkit for giant mobile element annotation☆26Updated last month
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆43Updated 8 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆11Updated 3 months ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- ☆37Updated last year
- Automatic eukaryotic taxonomic classification☆27Updated 2 weeks ago