A phylogeny dating method using least-squares algorithms and criteria
☆32Oct 25, 2024Updated last year
Alternatives and similar repositories for lsd2
Users that are interested in lsd2 are comparing it to the libraries listed below
Sorting:
- ☆12May 12, 2019Updated 6 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- IQ-TREE version 3: software for phylogenetics☆111Feb 17, 2026Updated 2 weeks ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 3 years ago
- A Full Featured Multiple Sequence Alignment Editor.☆26May 21, 2018Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 9 months ago
- Quality control for phylogenetic analyses☆13Feb 23, 2026Updated last week
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- HyPhy standalone analyses☆53Jan 5, 2026Updated last month
- Calculate summary statistics and manipulate multiple sequence alignments☆91Jan 28, 2026Updated last month
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 10, 2025Updated 9 months ago
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 3 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Updated this week
- ☆20Nov 18, 2021Updated 4 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Feb 23, 2026Updated last week
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆249Updated this week
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 7 months ago
- ☆21Mar 19, 2025Updated 11 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 2 weeks ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆195Sep 9, 2025Updated 5 months ago
- The Zika bioinformatics pipeline☆36Mar 29, 2020Updated 5 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆79Updated this week
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆76Sep 30, 2024Updated last year
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- ☆28May 22, 2020Updated 5 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- ☆11Feb 13, 2024Updated 2 years ago