marekborowiec / AMASLinks
Calculate summary statistics and manipulate multiple sequence alignments
☆84Updated last year
Alternatives and similar repositories for AMAS
Users that are interested in AMAS are comparing it to the libraries listed below
Sorting:
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 months ago
- ☆71Updated 3 weeks ago
- Interactive quality assessment of genome assemblies☆100Updated last month
- Reference-free profiling of polyploid genomes☆117Updated 2 weeks ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- Metagenomic classification of long-read sequencing data☆85Updated last month
- Recovering genes from targeted sequence capture data☆124Updated 5 months ago
- MITObim - mitochondrial baiting and iterative mapping☆112Updated 4 years ago
- Synteny Imager☆63Updated 10 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆101Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- An imagemagick-like frontend to Biopython SeqIO☆115Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆71Updated 8 months ago
- ☆211Updated 5 months ago
- Version 5 of the CAFE phylogenetics software☆134Updated 4 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- ☆148Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆146Updated 4 months ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆79Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆183Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Foreign Contamination Screening caller scripts and documentation☆130Updated 3 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆55Updated last week
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 4 months ago