marekborowiec / AMASLinks
Calculate summary statistics and manipulate multiple sequence alignments
☆91Updated last week
Alternatives and similar repositories for AMAS
Users that are interested in AMAS are comparing it to the libraries listed below
Sorting:
- Recovering genes from targeted sequence capture data☆131Updated last month
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 5 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 5 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆125Updated 2 weeks ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆76Updated last year
- shell tools for processing phylogenetic trees☆119Updated 3 years ago
- Synteny Imager☆65Updated last month
- ☆77Updated 8 months ago
- Best-fit model selection☆87Updated last year
- A set of functions to visualise genotypes based on a VCF☆88Updated 4 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆93Updated 2 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆120Updated last year
- Using ggtree to build phylogenetic trees☆50Updated last year
- Interactive quality assessment of genome assemblies☆118Updated last week
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆65Updated 2 weeks ago
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆87Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Foreign Contamination Screening caller scripts and documentation☆157Updated 10 months ago
- ☆34Updated 5 months ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆87Updated last week
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆158Updated 7 months ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆112Updated 7 months ago