marekborowiec / AMASLinks
Calculate summary statistics and manipulate multiple sequence alignments
☆84Updated last year
Alternatives and similar repositories for AMAS
Users that are interested in AMAS are comparing it to the libraries listed below
Sorting:
- Recovering genes from targeted sequence capture data☆126Updated 2 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆106Updated last year
- MITObim - mitochondrial baiting and iterative mapping☆112Updated 4 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Best-fit model selection☆81Updated last year
- Synteny Imager☆63Updated 10 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆102Updated 3 weeks ago
- Interactive quality assessment of genome assemblies☆102Updated 2 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆72Updated 9 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 5 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Create a tree using Mash distances☆167Updated last year
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- ☆71Updated last month
- source code for EVM☆112Updated 7 months ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆104Updated last week
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Assembly statistic visualisation☆90Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 8 months ago
- Best practices and workflow for genome annotation☆77Updated 3 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆138Updated 2 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆40Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year