emvolz / treedater
Scalable relaxed clock phylogenetic dating
☆24Updated 10 months ago
Alternatives and similar repositories for treedater:
Users that are interested in treedater are comparing it to the libraries listed below
- ☆17Updated 9 months ago
- ☆19Updated 8 months ago
- An R-wrapper for lsd2☆9Updated last year
- ☆11Updated last week
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- ☆17Updated 8 months ago
- R We There Yet?☆30Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆30Updated 3 weeks ago
- ☆9Updated 2 years ago
- Python version of PHLAWD☆21Updated 3 months ago
- Estimating time trees from very large phylogenies☆26Updated 6 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆35Updated 2 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆14Updated last year
- Reconstruction of transmission trees using genomic data☆61Updated last year
- Main development repository for SpreadGL☆16Updated 4 months ago
- ☆12Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 11 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆11Updated 7 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆14Updated last week
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- Phylodynamic inference☆18Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Tutorial on Bayesian phylogenetic analysis☆45Updated 7 years ago