Alternatives and similar repositories for treedater

Users that are interested in treedater are comparing it to the libraries listed below

• duchene / phylomad
  ☆19Updated last year
• emvolz-phylodynamics / treestructure
  ☆18Updated last month
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated last year
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 5 months ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last month
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆27Updated last year
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 6 years ago
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• dhelekal / CaveDive
  ☆17Updated last year
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• lorenzgerber / krakenSankey
  a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser
  ☆13Updated 6 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆22Updated 8 years ago
• mdkarcher / phylodyn
  ☆18Updated 3 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• phylogeography / SPREADv1
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
  ☆20Updated 6 years ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 2 months ago
• thomasp85 / PanVizGenerator
  Create your own PanViz visualizations
  ☆20Updated 7 years ago
• reptalex / phylofactor
  ☆27Updated last year
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆27Updated last year
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated last month
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 7 years ago
• gtonkinhill / rhierbaps
  rhierbaps: R implementation of hierBAPS
  ☆35Updated 4 years ago
• iferres / MLSTar
  An easy way of MLSTyping your genomes in R.
  ☆18Updated 4 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 4 years ago