emvolz / treedaterLinks
Scalable relaxed clock phylogenetic dating
☆27Updated 3 months ago
Alternatives and similar repositories for treedater
Users that are interested in treedater are comparing it to the libraries listed below
Sorting:
- ☆19Updated last year
- ☆18Updated 2 months ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- R We There Yet?☆32Updated 8 months ago
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- ☆19Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 7 months ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last week
- ☆28Updated last year
- initial commit☆26Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- ☆12Updated 6 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆30Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆37Updated last month
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆43Updated 4 months ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago