bayesiancook / phylobayes
PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)
☆12Updated 2 years ago
Related projects: ⓘ
- The MafFilter genome alignment processor☆17Updated this week
- BUSCOMP: BUSCO Compiler and Comparison tool☆20Updated 6 months ago
- Convergent substitution detection tool based on the PCOC model☆28Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 3 months ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆16Updated 2 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆19Updated last week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆21Updated 2 years ago
- Dinoflagellate Annotation Workflow☆11Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 2 months ago
- use paired-end transcriptome reads to scaffold genomes☆10Updated 5 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- Automatic evaluation of HGTs☆21Updated last week
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 9 years ago
- ☆9Updated 6 months ago
- Domain based annotation of transposable elements☆18Updated 10 months ago
- ☆12Updated 3 years ago
- Add multiple thread function for genome comparison☆15Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆10Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆24Updated 3 months ago
- ContScout sequence contamination filter tool☆13Updated last month
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Yet another Hi-C scaffolding tool☆19Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆11Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago