bayesiancook / phylobayesLinks
PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)
☆15Updated 3 years ago
Alternatives and similar repositories for phylobayes
Users that are interested in phylobayes are comparing it to the libraries listed below
Sorting:
- ☆22Updated 11 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated last month
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Automatic evaluation of HGTs☆30Updated 5 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆15Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- ☆26Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 7 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Helper scripts for making phylogenies☆15Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- ☆32Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 5 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆31Updated last month
- ContScout sequence contamination filter tool☆20Updated last month
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago