bayesiancook / phylobayesLinks
PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)
☆15Updated 4 years ago
Alternatives and similar repositories for phylobayes
Users that are interested in phylobayes are comparing it to the libraries listed below
Sorting:
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆43Updated last month
- ☆16Updated last year
- ☆22Updated 11 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Updated last year
- Automatic evaluation of HGTs☆30Updated 10 months ago
- Dinoflagellate Annotation Workflow☆15Updated 3 years ago
- Multi-genome synteny block visualization tool☆52Updated 2 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- ☆26Updated 4 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆37Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated 3 weeks ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- ☆33Updated last year
- ☆35Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago