lonelyjoeparker / befi-bats-guiLinks
Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
☆12Updated 7 years ago
Alternatives and similar repositories for befi-bats-gui
Users that are interested in befi-bats-gui are comparing it to the libraries listed below
Sorting:
- ☆12Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆25Updated last week
- ☆19Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 8 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- ☆18Updated 2 weeks ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Influenza genome analysis Nextflow workflow☆28Updated last week
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated last month
- Main development repository for SpreadGL☆19Updated 10 months ago
- An RNA virus strain-level identification tool for short reads.☆21Updated last year
- ☆10Updated 2 months ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- ☆31Updated 3 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆35Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆23Updated last week
- An R-wrapper for lsd2☆9Updated 2 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Updated 2 months ago
- map Illumina metagenomes to genomes!☆39Updated last month
- Lecture on viral phylodynamics☆12Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago