Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
☆14Sep 26, 2017Updated 9 years ago
Alternatives and similar repositories for befi-bats-gui
Users that are interested in befi-bats-gui are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 12, 2019Updated 7 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆42Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Oct 13, 2026Updated 3 weeks ago
- ☆20Jun 15, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- baltic - Backronymed Adaptable Lightweight Tree vIsualisation Code for molecular phylogeny manipulation, analysis and visualisation.☆133Updated this week
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated last year
- Phylogenetic tree library for JavaScript/Node.js☆39Nov 16, 2022Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆46Jul 2, 2026Updated 4 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- A tool to aid virus sequencing and accelerate IRMA.☆13Updated this week
- ☆19Jul 21, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Dec 20, 2022Updated 3 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- phylogenetic networks using ggplot2 and ggtree☆12Jun 11, 2026Updated 4 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Oct 15, 2026Updated 3 weeks ago
- Hamiltonian Monte Carlo on the space of phylogenies☆10Apr 20, 2017Updated 9 years ago
- ☆22May 27, 2024Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆52Jul 6, 2026Updated 4 months ago
- Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.☆16Sep 27, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A phylogeny dating method using least-squares algorithms and criteria☆37Oct 25, 2024Updated 2 years ago
- Probabilistic programming & automatic differentiation for phylogenetics☆13Aug 4, 2026Updated 3 months ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 5 months ago
- A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks☆15Sep 22, 2018Updated 8 years ago
- Dengue antigenic variation and evolutionary dynamics☆12Jan 7, 2022Updated 4 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 7 years ago
- Taxa Insertion by Parsimony☆16Jan 22, 2025Updated last year
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 7 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆46Sep 4, 2026Updated 2 months ago
- Tutorial on Bayesian phylogenetic analysis☆54Sep 21, 2017Updated 9 years ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jul 2, 2026Updated 4 months ago
- NLR-Annotator upload☆78Jul 19, 2023Updated 3 years ago
- ☆10Oct 9, 2024Updated 2 years ago