Alternatives and similar repositories for chronumental

Users that are interested in chronumental are comparing it to the libraries listed below

• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆40Updated last week
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated 3 months ago
• grubaughlab / DENV_pipeline
  ☆20Updated 8 months ago
• emvolz-phylodynamics / treestructure
  ☆18Updated 2 months ago
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆21Updated 5 years ago
• emvolz-phylodynamics / mlesky
  ☆11Updated 10 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆68Updated 2 years ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆28Updated 2 years ago
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• duchene / phylomad
  ☆19Updated last year
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 5 months ago
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated 2 weeks ago
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆36Updated last week
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆18Updated 2 years ago
• CDCgov / aquascope
  ☆21Updated 8 months ago
• danlwarren / RWTY
  R We There Yet?
  ☆32Updated 8 months ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated 2 months ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• covince / covince
  Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.
  ☆10Updated 3 years ago
• tothuhien / lsd2
  A phylogeny dating method using least-squares algorithms and criteria
  ☆30Updated last year
• mdkarcher / phylodyn
  ☆19Updated 4 years ago
• securebio / nao-mgs-workflow
  ☆15Updated last week
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆23Updated last year
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆51Updated 8 years ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆23Updated 9 months ago
• emvolz-phylodynamics / phydynR
  Coalescent simulation and likelihood for phylodynamic inference
  ☆14Updated 6 months ago
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated last year
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆37Updated last month
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆29Updated 7 months ago