Fast and accurate Phylogeny estimation with self-attention Networks
☆42Apr 19, 2025Updated last year
Alternatives and similar repositories for Phyloformer
Users that are interested in Phyloformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆87Updated this week
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated 2 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 6 months ago
- Code for learnable topological features for phylogenetic inference via graph neural networks☆10Mar 3, 2023Updated 3 years ago
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 2 months ago
- Complete assemblies of non-human primate genomes☆61May 20, 2025Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 7 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆40Apr 17, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆13Oct 5, 2020Updated 5 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Apr 21, 2026Updated last month
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆26May 3, 2026Updated last month
- A phylogeny dating method using least-squares algorithms and criteria☆33Oct 25, 2024Updated last year
- Linear-time de novo Long Read Assembler☆41Mar 19, 2026Updated 3 months ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated last year
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jun 8, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated last year
- ☆22Mar 19, 2025Updated last year
- Fast implementation of the neighbour-joining phylogenetic inference method☆23May 23, 2020Updated 6 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- ☆24Mar 17, 2026Updated 3 months ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- A coalsecent simulator with selection☆22Dec 2, 2020Updated 5 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Apr 24, 2024Updated 2 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- ☆101Apr 22, 2024Updated 2 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 2 years ago