lucanest / PhyloformerLinks
Fast and accurate Phylogeny estimation with self-attention Networks
☆37Updated 3 months ago
Alternatives and similar repositories for Phyloformer
Users that are interested in Phyloformer are comparing it to the libraries listed below
Sorting:
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 5 months ago
- Better Alignments with Translated HMMER☆21Updated 3 weeks ago
- Manipulate and generate figures for trees in Newick format☆22Updated last week
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- ☆22Updated 11 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 4 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated 2 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆33Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- Linear-time de novo Long Read Assembler☆42Updated 6 months ago
- ☆26Updated 11 months ago
- ☆21Updated this week
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- Genome size estimation from long read overlaps☆59Updated 2 weeks ago
- ☆41Updated this week
- Consensus genome annotation using OMA☆26Updated last month
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 10 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Merging assemblies by using adjacency algebraic model and classification☆23Updated 2 years ago