celinescornavacca / ecceTERALinks
☆12Updated 4 years ago
Alternatives and similar repositories for ecceTERA
Users that are interested in ecceTERA are comparing it to the libraries listed below
Sorting:
- Analyzer of Gene and Species Trees☆10Updated 9 years ago
- ☆72Updated 2 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆90Updated last week
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last week
- Workflow to detect and phase hybrids in target capture data☆19Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 5 months ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆111Updated last week
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆70Updated 10 months ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆102Updated last week
- Resources for Brown University's BIOL 1435 course.☆20Updated last year
- Small utility script to submit genomes to PHASTER for phage detection☆25Updated 3 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆32Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 5 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆58Updated 6 months ago
- spruceup☆25Updated 11 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Recovering genes from targeted sequence capture data☆126Updated last month
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Bifrost graph gene caller.☆96Updated 10 months ago
- ARG normalization by mapping to the ARO ontology.☆58Updated 2 weeks ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Updated 4 years ago
- shell tools for processing phylogenetic trees☆112Updated 2 years ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆18Updated 5 months ago
- Efficient phylogenetic clustering of viral sequences☆88Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆40Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 11 months ago