matsengrp / gctree
GCtree: phylogenetic inference of genotype-collapsed trees
☆16Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for gctree
- Processing and plotting tools for genomics data☆20Updated last week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- cgat-apps repository☆33Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- Unfazed by genomic variant phasing☆26Updated 5 months ago
- Simulation tool for ChIP- and other -seq experiments☆12Updated last year
- Population-wide Deletion Calling☆35Updated 2 months ago
- ☆21Updated 3 months ago
- Evolutionary Transcriptomics with R☆41Updated this week
- ☆24Updated 7 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated last year
- ☆21Updated 2 weeks ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated last month
- http://www.combio.pl/alfree☆22Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 3 years ago
- FamDB file format library and utilities☆17Updated last week
- ☆28Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- ☆21Updated 5 months ago
- ☆12Updated 4 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago