GCtree: phylogenetic inference of genotype-collapsed trees
☆18Aug 27, 2024Updated last year
Alternatives and similar repositories for gctree
Users that are interested in gctree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- simplified cellranger for long-read data☆21Aug 27, 2025Updated 7 months ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆11Mar 19, 2026Updated last week
- ☆11Aug 26, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- ☆14Sep 1, 2024Updated last year
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- ☆48Jan 10, 2025Updated last year
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- Postprocessing gadgets for output generated by RevBayes☆14Mar 20, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated last year
- ☆14Mar 18, 2022Updated 4 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Updated this week
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆15Feb 18, 2026Updated last month
- ☆12Jun 26, 2024Updated last year
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆89Mar 16, 2026Updated last week
- Analyzer of Gene and Species Trees☆10Aug 8, 2016Updated 9 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆250Updated this week
- Phylogenetic plots for R and ggplot☆27Oct 3, 2012Updated 13 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆15Oct 17, 2021Updated 4 years ago
- MCMCtree tutorials☆29May 27, 2024Updated last year
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 5 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆35Feb 6, 2026Updated last month
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆17Nov 23, 2023Updated 2 years ago
- SpadeR provides simple R functions to compute various biodiversity indices and related (dis)similarity measures based on individual-based…☆32Mar 11, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 2 weeks ago
- UCSC Genome Browser Docker Image☆17May 12, 2022Updated 3 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Boilerplate from web app using Gulp.JS☆35Jan 26, 2015Updated 11 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated last year