matsengrp / gctreeLinks
GCtree: phylogenetic inference of genotype-collapsed trees
☆17Updated 10 months ago
Alternatives and similar repositories for gctree
Users that are interested in gctree are comparing it to the libraries listed below
Sorting:
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Useful tools for working with Salmon output☆38Updated 5 years ago
- cgat-apps repository☆34Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Processing and plotting tools for genomics data☆20Updated last week
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Updated 3 years ago
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- alternative splicing analysis pipeline☆19Updated 4 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 4 years ago
- Evolutionary Transcriptomics with R☆44Updated last week
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- ☆79Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- A library for counting small kmer frequencies in nucleotide sequences.☆28Updated 8 months ago
- ☆17Updated last year
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- ☆19Updated 8 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- pathway based data integration and visualization☆41Updated 3 months ago
- Transcription Factor Enrichment Analysis☆34Updated last week
- Scoring GT/AG sites for improving spliced alignment☆45Updated this week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago