GCtree: phylogenetic inference of genotype-collapsed trees
☆18Aug 27, 2024Updated last year
Alternatives and similar repositories for gctree
Users that are interested in gctree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate phylogenetic datasets with minimal setup effort☆16Jun 2, 2026Updated last month
- simplified cellranger for long-read data☆21Aug 27, 2025Updated 11 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆12Jun 3, 2026Updated last month
- ☆12Aug 26, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 10 months ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆55Jul 19, 2026Updated last week
- A phylogeny dating method using least-squares algorithms and criteria☆33Oct 25, 2024Updated last year
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- ☆14Sep 1, 2024Updated last year
- Postprocessing gadgets for output generated by RevBayes☆14Mar 20, 2026Updated 4 months ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- ☆54Jan 10, 2025Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆64Updated this week
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- A book for my course☆25Updated this week
- MCMCtree tutorials☆30May 27, 2024Updated 2 years ago
- ☆13Apr 12, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.☆90Jul 15, 2026Updated 2 weeks ago
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆15Feb 18, 2026Updated 5 months ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆254Updated this week
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆16Oct 17, 2021Updated 4 years ago
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 4 years ago
- ☆15Aug 21, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 9 months ago
- UCSC Genome Browser Docker Image☆16May 12, 2022Updated 4 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆31Mar 11, 2026Updated 4 months ago
- Explore the cancer relevance of your gene list☆55May 31, 2026Updated last month
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆18Nov 23, 2023Updated 2 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jun 8, 2026Updated last month