sdwfrost / influenza-dynamics-practical-h5n1Links
Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
☆10Updated 11 years ago
Alternatives and similar repositories for influenza-dynamics-practical-h5n1
Users that are interested in influenza-dynamics-practical-h5n1 are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- Lecture on viral phylodynamics☆12Updated 3 years ago
- R We There Yet?☆30Updated 2 months ago
- ☆17Updated this week
- syllabus and lectures for the course☆8Updated 9 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last month
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- ☆22Updated 2 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆9Updated 10 years ago
- FAST is an Amplicon Sequencing Toolbox v1.2☆9Updated 6 years ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Work on the variant_pipeline and initial r analysis used in calling variants from NGS data☆9Updated 6 years ago
- ☆19Updated 11 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 11 months ago
- babette is an R package to work with BEAST2☆45Updated 3 weeks ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆16Updated 2 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 3 weeks ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆18Updated last month