sdwfrost / influenza-dynamics-practical-h5n1Links
Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
☆10Updated 12 years ago
Alternatives and similar repositories for influenza-dynamics-practical-h5n1
Users that are interested in influenza-dynamics-practical-h5n1 are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆27Updated last month
- R We There Yet?☆31Updated 7 months ago
- Tutorial on Bayesian phylogenetic analysis☆47Updated 8 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 8 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- Visualization tool for genetic reassortment☆21Updated 6 months ago
- ☆19Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- ☆28Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Calculate distances between phylogenetic trees in R☆34Updated 2 weeks ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 5 months ago
- ☆12Updated 6 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- ☆19Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- ☆67Updated 9 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆16Updated 2 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Create your own PanViz visualizations☆20Updated 7 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- ☆43Updated 8 years ago
- Estimating time trees from very large phylogenies☆28Updated last year