emvolz-phylodynamics / phydynRLinks
Coalescent simulation and likelihood for phylodynamic inference
☆14Updated 5 months ago
Alternatives and similar repositories for phydynR
Users that are interested in phydynR are comparing it to the libraries listed below
Sorting:
- ☆11Updated 8 months ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- ☆19Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆27Updated last month
- ☆18Updated 3 weeks ago
- Pathogen evolution, selection and immunity☆45Updated last year
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- Phylogenetic inference using Stan☆23Updated 7 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- Tools for evolutionary forecasting☆14Updated last month
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- ☆18Updated 6 months ago
- ☆11Updated 5 months ago
- R package to run BEAST2☆11Updated 2 months ago
- A model-based visualization method for microbiome data☆16Updated this week
- ☆19Updated last month
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- PhyDyn: Epidemiological modelling in BEAST☆21Updated 2 years ago
- babette is an R package to work with BEAST2☆46Updated this week
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 6 years ago
- Conditional Auto-Regressive LASSO in R☆20Updated 2 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Updated 3 years ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Phylodynamic inference☆19Updated 5 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 12 years ago