Alternatives and similar repositories for phydynR:

Users that are interested in phydynR are comparing it to the libraries listed below

• emvolz-phylodynamics / mlesky
  ☆11Updated last week
• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated 3 weeks ago
• laduplessis / skylinetools
  Utilities and distributions for (birth-death) skyline models.
  ☆10Updated 5 years ago
• mdkarcher / phylodyn
  ☆17Updated 3 years ago
• emmanuelparadis / phylobench
  ☆11Updated 2 years ago
• thibautjombart / OutbreakTools
  Basic Tools for the Analysis of Disease Outbreaks
  ☆12Updated 5 years ago
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated 3 weeks ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 9 months ago
• sdwfrost / mevr-course-2016
  Molecular Epidemiology of Viruses in R
  ☆19Updated 9 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 10 months ago
• reconhub / outbreaker2
  Disease outbreak reconstruction from epidemiological and genetic data
  ☆31Updated 4 months ago
• sdwfrost / influenza-dynamics-practical-h5n1
  Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
  ☆10Updated 11 years ago
• walterxie / TraceR
  Simplified Tracer in R and Extras
  ☆9Updated 2 months ago
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated last year
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆26Updated 6 months ago
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 3 years ago
• covince / covince
  Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.
  ☆10Updated 2 years ago
• mrc-ide / PhyDyn
  PhyDyn: Epidemiological modelling in BEAST
  ☆22Updated 2 years ago
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆44Updated this week
• blab / global-migration
  Analysis of global migration patterns of seasonal influenza viruses
  ☆22Updated 5 years ago
• CenterForStatistics-UGent / RCM
  A model-based visualization method for microbiome data
  ☆16Updated last year
• ChrisHIV / teaching
  ☆19Updated last month
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated 7 months ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆23Updated last year
• JuliaPhylo / PhyloCoalSimulations.jl
  ☆14Updated 2 months ago
• abschneider / StrainHub
  Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
  ☆16Updated 2 years ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆23Updated 7 months ago
• YunyiShen / CAR-LASSO
  Conditional Auto-Regressive LASSO in R
  ☆20Updated 2 years ago
• grubaughlab / DENV_pipeline
  ☆16Updated 3 weeks ago
• outbreak-info / R-outbreak-info
  R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
  ☆20Updated last year