emvolz-phylodynamics / phydynRLinks
Coalescent simulation and likelihood for phylodynamic inference
☆14Updated 6 months ago
Alternatives and similar repositories for phydynR
Users that are interested in phydynR are comparing it to the libraries listed below
Sorting:
- ☆11Updated 10 months ago
- ☆19Updated 4 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- ☆18Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last week
- Phylogenetic inference using Stan☆23Updated 9 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- ☆11Updated 7 months ago
- babette is an R package to work with BEAST2☆46Updated last month
- Pathogen evolution, selection and immunity☆45Updated last year
- Metagenomics calibration R package☆20Updated 3 years ago
- A model-based visualization method for microbiome data☆16Updated last month
- ☆19Updated last week
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 12 years ago
- ☆19Updated last year
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆31Updated 7 months ago
- Phylogenetic Likelihood Library 2 - experimental☆11Updated 6 months ago
- R We There Yet?☆32Updated 8 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 2 weeks ago
- An Amazing Shiny App☆17Updated 4 years ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- K-mer Counting for Biological Sequence Analysis☆27Updated 6 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- R package to run BEAST2☆11Updated this week