evolbioinfo / pastmlLinks
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
☆38Updated 2 months ago
Alternatives and similar repositories for pastml
Users that are interested in pastml are comparing it to the libraries listed below
Sorting:
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 3 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆43Updated 2 years ago
- ☆18Updated last year
- ☆43Updated last year
- ☆22Updated 11 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆57Updated 2 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 8 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- deep learning prediction of geographic location from individual genome sequences☆52Updated 11 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Updated 3 years ago
- Efficient calculation of phylogenetic distance matrices.☆49Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- A tool to root phylogenies☆23Updated last year
- spruceup☆25Updated 4 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 2 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- multiPhATE with comparative genomics☆18Updated 4 years ago
- ☆19Updated last year
- genotype dimensionality reduction with a VAE☆48Updated 9 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Gene-flank analysis tool☆34Updated last year
- A package to annotate protein sequences☆60Updated 10 months ago
- orthology assignment using phylogenetic and network analyses☆53Updated 2 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- Reference genome quality scores☆21Updated 5 years ago
- distance based phylogenetic placement☆27Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 8 months ago