evolbioinfo / pastml
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
☆32Updated 2 months ago
Alternatives and similar repositories for pastml:
Users that are interested in pastml are comparing it to the libraries listed below
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- ☆22Updated 11 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 8 months ago
- ☆12Updated 5 years ago
- A set of scripts for calculating pairwise SNP distance☆39Updated 2 years ago
- ☆28Updated 4 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆47Updated 3 weeks ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 3 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆47Updated last year
- orthology assignment using phylogenetic and network analyses☆46Updated 3 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- Automatic Assembly For The Fungi☆19Updated 2 months ago
- ✏️ Genome assembly polishing & SNV detection☆66Updated last month
- distance based phylogenetic placement☆26Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆68Updated 3 months ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Ancient microbiome snakemake workflow☆22Updated 3 months ago
- Recombination-free trees☆57Updated last year
- Correct and scaffold assemblies using long reads☆50Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Efficient calculation of phylogenetic distance matrices.☆46Updated 5 months ago
- Influenza data pipeline to automate genotyping assignment☆29Updated last month
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago