evolbioinfo / pastmlLinks
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
☆33Updated 3 weeks ago
Alternatives and similar repositories for pastml
Users that are interested in pastml are comparing it to the libraries listed below
Sorting:
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 2 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆22Updated 11 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- spruceup☆24Updated 10 months ago
- A set of scripts for calculating pairwise SNP distance☆41Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆48Updated 3 weeks ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- Gene-flank analysis tool☆27Updated 6 months ago
- rhierbaps: R implementation of hierBAPS☆35Updated 4 years ago
- ☆12Updated 6 years ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 3 months ago
- A phylogeny dating method using least-squares algorithms and criteria☆27Updated 8 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆36Updated last week
- Correct and scaffold assemblies using long reads☆54Updated last year
- ☆27Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last week
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- ☆36Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- HyPhy standalone analyses☆44Updated 2 months ago