serratus-bio / tantalusLinks
R Data Exploration for Serratus
☆15Updated 2 years ago
Alternatives and similar repositories for tantalus
Users that are interested in tantalus are comparing it to the libraries listed below
Sorting:
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 4 months ago
- map Illumina metagenomes to genomes!☆38Updated 3 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- ☆28Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 3 weeks ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆27Updated 4 months ago
- ☆16Updated 2 years ago
- ☆23Updated 6 years ago
- ☆14Updated 5 years ago
- A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.☆21Updated 3 weeks ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- A comprehensive pipeline for short read metagenomic data☆25Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆12Updated 6 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆29Updated 5 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago