serratus-bio / tantalus
R Data Exploration for Serratus
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for tantalus
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Nanopore Real-Time Analysis Tool☆14Updated 2 months ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated last week
- Simple R utilities for working with HMMER☆18Updated last month
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆25Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Reconstruction of transmission trees using genomic data☆60Updated last year
- Tutorial on using E-utilities☆19Updated 3 years ago
- ☆23Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆52Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆26Updated 4 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated 7 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37Updated last year
- SARS-CoV-2 variant calling and consensus assembly pipeline☆24Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆19Updated 2 weeks ago
- ☆34Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 8 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Evolutionary Transcriptomics with R☆41Updated this week
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 5 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆29Updated 2 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago