heibl / ips
R Interfaces to Phylogenetic Software
☆12Updated 2 months ago
Alternatives and similar repositories for ips:
Users that are interested in ips are comparing it to the libraries listed below
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 10 months ago
- R tools for integrating phylogenies and ecology☆35Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated 9 months ago
- babette is an R package to work with BEAST2☆45Updated last week
- Phylogenetic ANalyses of DiversificAtion☆24Updated 3 months ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆17Updated 3 weeks ago
- Informatic Sequence Classification Trees☆14Updated 3 weeks ago
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- Performs MCMCglmm on multiple phylogenetic trees☆12Updated 3 weeks ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 6 years ago
- An R pakage to calculate diversity through Hill Numbers☆34Updated last year
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- rtrees: an R package to assemble phylogenetic trees from mega-trees☆34Updated last week
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- Look Up Guild Information for Fungi in R☆21Updated last month
- A repository for my work on rCRUX☆11Updated 10 months ago
- R package to run BEAST2☆11Updated this week
- ☆34Updated 6 months ago
- A textbook for phylogenetic comparative methods.☆43Updated 5 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- Species occurrence dot maps in R☆21Updated 3 years ago
- Functions for phylogenetic analyses☆31Updated last year
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆12Updated last year
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated this week
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Machuruku☆31Updated 3 months ago
- Microbial community analysis tools in R☆21Updated 2 years ago
- Species richness with high diversity☆68Updated 3 weeks ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago