Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
☆80Oct 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for catfasta2phyml
Users that are interested in catfasta2phyml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for calculating features and regression of prokaryote OGT☆26Feb 13, 2024Updated 2 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆44Updated this week
- A hybrid summary method for reconstructing species tree from gene trees☆10Jan 6, 2021Updated 5 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆93Oct 23, 2026Updated last week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Calculate summary statistics and manipulate multiple sequence alignments☆102Jan 28, 2026Updated 9 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 5 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated 2 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- ☆49Sep 5, 2023Updated 3 years ago
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated last year
- ☆83May 2, 2026Updated 5 months ago
- ☆11Feb 9, 2024Updated 2 years ago
- A compositional bias testing and pruning tool for multiple sequence alignments☆13Jun 16, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆273Updated this week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- Accurate Species TRee ALgorithm☆282Apr 1, 2024Updated 2 years ago
- Analyzing combinations of codon substitution histories☆48Updated this week
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆87Jul 8, 2026Updated 3 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆72Mar 10, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 7 months ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Methods for the analyses described in Moody et al. 2024 (https://www.nature.com/articles/s41559-024-02461-1)☆13Dec 10, 2025Updated 10 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Best-fit model selection☆91Mar 21, 2024Updated 2 years ago
- This is code for running Orthofinder -> PAML☆14Jul 27, 2016Updated 10 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆85Jun 17, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆21Apr 1, 2025Updated last year
- HyPhy 2.5.x (Maintenance Mode — bug fixes only). All active development has moved to HyPhy 3: https://github.com/veg/hyphy-3☆275Oct 13, 2026Updated 2 weeks ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 4 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated 3 weeks ago
- ☆16Oct 8, 2026Updated 3 weeks ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago