Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
☆77Sep 30, 2024Updated last year
Alternatives and similar repositories for catfasta2phyml
Users that are interested in catfasta2phyml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene tree - species tree reconciliation from gene tree distributions☆38Mar 13, 2026Updated 2 weeks ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated this week
- ☆16Dec 25, 2024Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆93Jan 28, 2026Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆34Jul 12, 2022Updated 3 years ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆254Updated this week
- ☆44Sep 5, 2023Updated 2 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆82Updated this week
- ☆42Apr 2, 2024Updated last year
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆82Aug 16, 2025Updated 7 months ago
- Command Line Interface for Genomes on a Tree.☆13Mar 15, 2026Updated last week
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Mar 19, 2026Updated last week
- http://huttenhower.sph.harvard.edu/waafle☆23Feb 26, 2026Updated last month
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- AncestralClust☆11Jul 9, 2025Updated 8 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Oct 9, 2025Updated 5 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- Phylogenetic orthology inference for comparative genomics☆840Jul 15, 2025Updated 8 months ago
- ☆31Oct 26, 2021Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- ☆76Apr 23, 2020Updated 5 years ago