Prediction fitness of leaves on a genealogical tree
☆12May 7, 2015Updated 11 years ago
Alternatives and similar repositories for FitnessInference
Users that are interested in FitnessInference are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BEAST2 implementation of the Masco approximation of the structured coalescent with forwards/backwards algorithm for node state calculatio…☆12Oct 13, 2026Updated 3 weeks ago
- ☆13Oct 26, 2026Updated last week
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆26Feb 26, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framew…☆13Oct 27, 2024Updated 2 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆34Oct 25, 2013Updated 13 years ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- ☆23Oct 9, 2026Updated 3 weeks ago
- flu utilities☆12Feb 1, 2023Updated 3 years ago
- ☆12May 12, 2019Updated 7 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆37Oct 25, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Oct 24, 2026Updated last week
- ☆20Nov 18, 2021Updated 4 years ago
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 11 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆41Oct 24, 2026Updated last week
- Dengue antigenic variation and evolutionary dynamics☆12Jan 7, 2022Updated 4 years ago
- R Data Exploration for Serratus☆17Mar 29, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 3 years ago
- Global phylogenies of SARS-CoV-2 sequences☆87Oct 24, 2023Updated 3 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- QC plots and statistics☆12Aug 19, 2026Updated 2 months ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆65Updated this week
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆23Oct 27, 2020Updated 6 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/exercisesheet☆11Dec 17, 2015Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- linear time suffix array construction algorithm☆11Oct 28, 2016Updated 10 years ago
- ☆11Dec 30, 2020Updated 5 years ago
- ☆16Updated this week
- ☆18Jun 11, 2024Updated 2 years ago
- ☆11Sep 27, 2022Updated 4 years ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆23Oct 23, 2026Updated last week
- ☆16Jan 10, 2023Updated 3 years ago