rneher / FitnessInference
Prediction fitness of leaves on a genealogical tree
☆11Updated 9 years ago
Alternatives and similar repositories for FitnessInference:
Users that are interested in FitnessInference are comparing it to the libraries listed below
- A collection of documented examples using TreeTime☆21Updated 5 years ago
- ☆12Updated 5 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 6 months ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Work on the variant_pipeline and initial r analysis used in calling variants from NGS data☆9Updated 6 years ago
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆14Updated 5 months ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 5 months ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆19Updated last year
- Primer schemes for real-time genome epidemiology☆27Updated last year
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆17Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆47Updated last month
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 6 years ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 7 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- ☆28Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆67Updated 3 months ago