Alternatives and similar repositories for FitnessInference

Users that are interested in FitnessInference are comparing it to the libraries listed below

• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆22Updated 5 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆32Updated 7 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆32Updated 2 years ago
• SegataLab / metaml
  ☆32Updated 10 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆34Updated 2 years ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 4 years ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 6 years ago
• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆26Updated 4 years ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆28Updated 3 months ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆29Updated last year
• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆22Updated 6 years ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆57Updated 4 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• burstein-lab / genomic-nlp
  ☆26Updated 10 months ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• sequana / rnaseq
  RNA-seq, QC and differential analysis pipeline
  ☆17Updated 9 months ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated last month
• zichner / primerDesign
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆46Updated 8 years ago
• matdoering / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆27Updated 2 weeks ago
• lichen-lab / MDeep
  ☆15Updated 5 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 9 months ago
• bpucker / APPLS
  Applied Python Programming for Life Scientists
  ☆25Updated 4 years ago
• WallauBioinfo / ViralFlow
  Workflow for viral analysis guided by reference
  ☆12Updated 2 months ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆75Updated last week
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆64Updated last week