Alternatives and similar repositories for FitnessInference

Users that are interested in FitnessInference are comparing it to the libraries listed below

• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆22Updated 7 years ago
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆22Updated 6 years ago
• SegataLab / metaml
  ☆34Updated last year
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆58Updated 3 weeks ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆35Updated 2 years ago
• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 5 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 4 months ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆38Updated 8 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆47Updated 9 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆62Updated 2 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• sequana / rnaseq
  RNA-seq, QC and differential analysis pipeline
  ☆17Updated last month
• sanger-pathogens / pathogen-informatics-training
  ☆75Updated 5 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated last month
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆44Updated 2 weeks ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 7 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• cellmapslab / DeepWAS
  DeepWAS: Directly integrating regulatory information into GWAS using machine learning
  ☆17Updated 6 years ago
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆66Updated 3 weeks ago
• WallauBioinfo / ViralFlow
  Workflow for viral analysis guided by reference
  ☆15Updated last week
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆28Updated 2 months ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆43Updated 9 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 2 months ago
• crazyinter / Seq2Vec
  a novel encoding method for viral identification in metagenomics
  ☆15Updated 2 years ago
• tseemann / PEAR
  Pair-End AssembeR
  ☆33Updated 11 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆92Updated 5 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• bioinf-mcb / gisaid-scrapper
  Scrapping tool for GISAID data regarding SARS-CoV-2
  ☆41Updated 2 years ago