Prediction fitness of leaves on a genealogical tree
☆12May 7, 2015Updated 10 years ago
Alternatives and similar repositories for FitnessInference
Users that are interested in FitnessInference are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆23Feb 26, 2026Updated last month
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 6 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 10 months ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- ☆18Mar 20, 2026Updated last week
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 3 months ago
- ☆20Nov 18, 2021Updated 4 years ago
- ☆12May 12, 2019Updated 6 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 2 years ago
- ☆18Jun 11, 2024Updated last year
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆59Updated this week
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 2 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 3 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆50Dec 5, 2025Updated 3 months ago
- Automatically exported from code.google.com/p/exercisesheet☆11Dec 17, 2015Updated 10 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 6 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 5 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated last month
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Nov 8, 2024Updated last year
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- ☆15Jan 10, 2023Updated 3 years ago
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- ☆10Sep 27, 2022Updated 3 years ago
- ☆12Apr 13, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- R package for estimating and visualizing multilevel propensity score models.☆16Nov 17, 2025Updated 4 months ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆70Oct 11, 2023Updated 2 years ago
- linear time suffix array construction algorithm☆12Oct 28, 2016Updated 9 years ago
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Nextstrain build for avian influenza viruses☆27Feb 13, 2026Updated last month
- A scraper for bioRxiv☆12Apr 12, 2023Updated 2 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago