Prediction fitness of leaves on a genealogical tree
☆12May 7, 2015Updated 11 years ago
Alternatives and similar repositories for FitnessInference
Users that are interested in FitnessInference are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 2 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆26Feb 26, 2026Updated 6 months ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 13 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆34Oct 25, 2024Updated last year
- ☆23Jul 5, 2026Updated 2 months ago
- ☆12May 12, 2019Updated 7 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Aug 25, 2026Updated 3 weeks ago
- ☆20Nov 18, 2021Updated 4 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆40Updated this week
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆23Oct 27, 2020Updated 5 years ago
- R Data Exploration for Serratus☆17Mar 29, 2023Updated 3 years ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆65Updated this week
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆18Jan 16, 2023Updated 3 years ago
- ☆18Jun 11, 2024Updated 2 years ago
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 3 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated last month
- Automatically exported from code.google.com/p/exercisesheet☆11Dec 17, 2015Updated 10 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- linear time suffix array construction algorithm☆12Oct 28, 2016Updated 9 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated 2 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 7 months ago
- ☆13Apr 13, 2020Updated 6 years ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆22Aug 6, 2026Updated last month
- A scraper for bioRxiv☆12Apr 12, 2023Updated 3 years ago
- R package for estimating and visualizing multilevel propensity score models.☆16Nov 17, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 3 months ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆74Oct 11, 2023Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆56Dec 5, 2025Updated 9 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 10 months ago
- Nextstrain build for avian influenza viruses☆29Updated this week
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 6 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 3 years ago