rneher / FitnessInferenceLinks
Prediction fitness of leaves on a genealogical tree
☆11Updated 10 years ago
Alternatives and similar repositories for FitnessInference
Users that are interested in FitnessInference are comparing it to the libraries listed below
Sorting:
- A collection of documented examples using TreeTime☆21Updated 5 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆48Updated 3 weeks ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆26Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Process consensus file for COG-UK data☆14Updated 3 years ago
- Evolutionary Transcriptomics with R☆43Updated this week
- Influenza genome analysis Nextflow workflow☆22Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- Work on the variant_pipeline and initial r analysis used in calling variants from NGS data☆9Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 3 weeks ago
- Main development repository for SpreadGL☆18Updated 9 months ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated this week
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 8 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- ☆12Updated 6 years ago
- ☆27Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago