R code for writing Beast2 XML (especially morphology/tip-dating)
☆11Sep 15, 2026Updated last week
Alternatives and similar repositories for BEASTmasteR
Users that are interested in BEASTmasteR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data and scripts for Zika virus tutorial☆10Jul 21, 2026Updated 2 months ago
- ☆14Aug 13, 2026Updated last month
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 7 years ago
- A book for my course☆28Sep 4, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Aug 17, 2026Updated last month
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated last year
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated last year
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆17May 19, 2017Updated 9 years ago
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated last year
- ☆49Sep 5, 2023Updated 3 years ago
- babette is an R package to work with BEAST2☆46Jul 16, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 2 months ago
- Browser-based utility for phylogenetic tree visualisation.☆40Jun 1, 2026Updated 3 months ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆11Dec 20, 2022Updated 3 years ago
- Phylogenetic penalized likelihood☆59Sep 8, 2026Updated 2 weeks ago
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated 3 months ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated 2 years ago
- Python code to generate BEAST2 XML files☆23May 6, 2026Updated 4 months ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆26Jun 16, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆43Apr 2, 2024Updated 2 years ago
- ☆25Feb 11, 2026Updated 7 months ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆72Mar 10, 2021Updated 5 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆14Sep 26, 2017Updated 9 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆90Updated this week
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 6 months ago
- R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphi…☆23Jul 22, 2026Updated 2 months ago
- spruceup☆25Aug 15, 2025Updated last year
- ☆12May 12, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Render viral capsids in the browser and export SVG.☆12Updated this week
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆19Sep 24, 2025Updated last year
- Estimating time trees from very large phylogenies☆27Sep 8, 2026Updated 2 weeks ago
- Reconstruct Ancestral State in Phylogenies☆32May 21, 2024Updated 2 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 6 years ago