trvrb / dynamics-practicalLinks
Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
☆32Updated 11 years ago
Alternatives and similar repositories for dynamics-practical
Users that are interested in dynamics-practical are comparing it to the libraries listed below
Sorting:
- Set of tools for viral metagenomics.☆14Updated 3 weeks ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- reference free variant assembly☆33Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆25Updated 7 years ago
- Reduced Alphabet based Protein similarity Search☆41Updated 4 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 6 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Lecture on viral phylodynamics☆12Updated 3 years ago
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆11Updated 7 years ago
- ☆12Updated 8 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆33Updated 3 weeks ago
- smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.☆11Updated 3 weeks ago
- Library of snakemake rules.☆12Updated 6 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18Updated 7 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Updated last year