trvrb / dynamics-practicalLinks
Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
☆32Updated 11 years ago
Alternatives and similar repositories for dynamics-practical
Users that are interested in dynamics-practical are comparing it to the libraries listed below
Sorting:
- Set of tools for viral metagenomics.☆14Updated last week
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆19Updated 10 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆55Updated 2 weeks ago
- ☆21Updated 10 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- The Microbiome Interpretable Temporal Rule Engine☆47Updated 4 years ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Updated 7 years ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Lesson on data analysis and visualization in R for genomics☆43Updated 6 years ago
- in silico plasmid extraction☆13Updated 7 years ago
- Lecture on viral phylodynamics☆12Updated 3 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Updated 3 years ago
- Reduced Alphabet based Protein similarity Search☆41Updated 4 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.☆28Updated 2 years ago