Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
☆33Oct 25, 2013Updated 12 years ago
Alternatives and similar repositories for dynamics-practical
Users that are interested in dynamics-practical are comparing it to the libraries listed below
Sorting:
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆37Mar 2, 2026Updated 2 weeks ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 6 years ago
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Visualization tool for genetic reassortment☆21Nov 1, 2025Updated 4 months ago
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 12 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- Ebola virus surveillance☆15Aug 28, 2016Updated 9 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 10 months ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 3 months ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 5 years ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Jun 26, 2022Updated 3 years ago
- A Heroku service that lets you send anonymous messages to colleagues on Slack.☆20Jun 19, 2020Updated 5 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 2 months ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆21Aug 11, 2025Updated 7 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- ☆19Nov 24, 2025Updated 3 months ago
- Alignment editor for Mac OS X☆29Aug 1, 2017Updated 8 years ago
- ☆20Nov 18, 2021Updated 4 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Getting started with PyQuil: Quantum dice example☆14Jul 10, 2018Updated 7 years ago
- Influenza forecasts visualizer☆43Dec 6, 2022Updated 3 years ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Sep 23, 2025Updated 5 months ago
- I do not have time to maintain this anymore! It remains as a sandbox/playground :)☆11May 13, 2024Updated last year