Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
☆33Oct 25, 2013Updated 12 years ago
Alternatives and similar repositories for dynamics-practical
Users that are interested in dynamics-practical are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 6 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated last month
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated 3 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆16May 15, 2025Updated last year
- Alignment editor for Mac OS X☆29Aug 1, 2017Updated 8 years ago
- Scalable relaxed clock phylogenetic dating☆28Jul 5, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Ebola virus surveillance☆15Aug 28, 2016Updated 9 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆18Jun 26, 2022Updated 4 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆33Oct 25, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆61Jul 2, 2026Updated 2 weeks ago
- Browser-based Interactive Phylogeographic Animations☆20Aug 29, 2017Updated 8 years ago
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- Prediction pipeline to generate prognosis predictors for Ebola Virus Disease☆12Feb 22, 2016Updated 10 years ago
- Visualization tool for genetic reassortment☆21Apr 29, 2026Updated 2 months ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Reconstruction of transmission trees using genomic data☆72Jul 14, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 7 months ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆86Mar 2, 2026Updated 4 months ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated 3 weeks ago