sysbiolab / TreeAndLeaf
An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.
☆11Updated 3 years ago
Alternatives and similar repositories for TreeAndLeaf:
Users that are interested in TreeAndLeaf are comparing it to the libraries listed below
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 10 months ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- ☆13Updated last year
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆16Updated this week
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 8 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 7 months ago
- ☆19Updated last year
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated 8 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated 11 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 9 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated 9 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 8 months ago
- ☆26Updated 10 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 4 months ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆14Updated 6 months ago
- ☆20Updated 2 weeks ago
- A DRAFT, early stage book on snakemake.☆18Updated last year
- ☆12Updated 7 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆12Updated 3 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆54Updated 5 months ago
- Tools for analyzing trees☆14Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 9 months ago