A robust and fast clustering method for amplicon-based studies
☆147May 1, 2026Updated this week
Alternatives and similar repositories for swarm
Users that are interested in swarm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Versatile open-source tool for microbiome analysis☆745Apr 24, 2026Updated last week
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- creating hybrid-gene phylogenetic trees for diversity analyses☆30Aug 23, 2022Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week
- Accurate sample inference from amplicon data with single nucleotide resolution☆546Feb 13, 2026Updated 2 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆18May 26, 2025Updated 11 months ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 3 months ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆65Updated this week
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆21Jan 8, 2024Updated 2 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆77Nov 26, 2024Updated last year
- EukRef curation pipeline☆13May 11, 2021Updated 4 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated 2 months ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- A library for working with phylogenetic and population genetic data.☆67Apr 24, 2026Updated last week
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- The Biological Observation Matrix (BIOM) Format Project☆97Dec 23, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- Mostly useful scripts and files for processing MiSeq amplicon data☆18Jul 1, 2016Updated 9 years ago
- Cutadapt removes adapter sequences from sequencing reads☆578Apr 6, 2026Updated 3 weeks ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 6 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆278Jan 13, 2026Updated 3 months ago
- The BioPerl Web site: http://bioperl.org☆14Aug 29, 2019Updated 6 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆212Aug 21, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Collection of commonly used RDP Tools for easy building☆51Jun 8, 2023Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Oct 25, 2022Updated 3 years ago
- ☆43Jul 31, 2017Updated 8 years ago
- SINA - Reference based multiple sequence alignment☆41Dec 13, 2020Updated 5 years ago
- Fast genome and metagenome distance estimation using MinHash☆441Sep 19, 2025Updated 7 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆293Updated this week
- 🌈 Interactive analysis of metagenomics data☆449Sep 17, 2025Updated 7 months ago