A robust and fast clustering method for amplicon-based studies
☆150Sep 19, 2026Updated this week
Alternatives and similar repositories for swarm
Users that are interested in swarm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Versatile open-source tool for microbiome analysis☆761Updated this week
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆75Dec 21, 2023Updated 2 years ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆558Jul 31, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- creating hybrid-gene phylogenetic trees for diversity analyses☆30Aug 23, 2022Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆557Updated this week
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 8 months ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆65Apr 28, 2026Updated 4 months ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 3 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 11 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆88Feb 26, 2026Updated 6 months ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆21Jan 8, 2024Updated 2 years ago
- A library for working with phylogenetic and population genetic data.☆67Jul 18, 2026Updated 2 months ago
- EukRef curation pipeline☆13May 11, 2021Updated 5 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- The Biological Observation Matrix (BIOM) Format Project☆98Jun 1, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- Mostly useful scripts and files for processing MiSeq amplicon data☆19Jul 1, 2016Updated 10 years ago
- Cutadapt removes adapter sequences from sequencing reads☆587Updated this week
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 7 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆281Aug 21, 2026Updated last month
- The BioPerl Web site: http://bioperl.org☆14Aug 29, 2019Updated 7 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆68Updated this week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆216Aug 21, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Collection of commonly used RDP Tools for easy building☆53Jun 8, 2023Updated 3 years ago
- Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks☆12Jun 16, 2020Updated 6 years ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- SINA - Reference based multiple sequence alignment☆41Dec 13, 2020Updated 5 years ago
- ☆43Jul 31, 2017Updated 9 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 3 months ago