lh3 / seqtkLinks
Toolkit for processing sequences in FASTA/Q formats
☆1,512Updated 5 months ago
Alternatives and similar repositories for seqtk
Users that are interested in seqtk are comparing it to the libraries listed below
Sorting:
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,391Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆876Updated 9 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,007Updated 8 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,137Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,220Updated last month
- Phylogenetic orthology inference for comparative genomics☆813Updated 4 months ago
- A fast and sensitive gapped read aligner☆751Updated 2 months ago
- The second version of the Kraken taxonomic sequence classification system☆846Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆742Updated 3 months ago
- Bioinformatics code libraries and scripts☆551Updated 4 months ago
- The next version of bwa-mem☆795Updated last month
- MACS -- Model-based Analysis of ChIP-Seq☆759Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆871Updated last week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆847Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆519Updated 2 months ago
- SPAdes Genome Assembler☆877Updated last week
- Rapid prokaryotic genome annotation☆941Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,049Updated 3 months ago
- A quality control analysis tool for high throughput sequencing data☆553Updated 2 weeks ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆852Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆669Updated 5 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆847Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆880Updated 6 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,072Updated last month
- SRA Tools☆1,272Updated this week
- A list of interesting genome browser and genome visualization programs☆1,023Updated last week
- Near-optimal RNA-Seq quantification☆710Updated this week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆531Updated 2 months ago
- RNAseq analysis notes from Ming Tang☆1,050Updated 4 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,019Updated last year