lh3 / seqtk
Toolkit for processing sequences in FASTA/Q formats
☆1,449Updated 7 months ago
Alternatives and similar repositories for seqtk:
Users that are interested in seqtk are comparing it to the libraries listed below
- bedtools - the swiss army knife for genome arithmetic☆975Updated 3 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,283Updated this week
- The next version of bwa-mem☆746Updated 8 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆729Updated last month
- Near-optimal RNA-Seq quantification☆673Updated 4 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,048Updated 4 months ago
- Bioinformatics code libraries and scripts☆520Updated last month
- Tools to process and analyze deep sequencing data.☆711Updated this week
- RNAseq analysis notes from Ming Tang☆993Updated 3 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆800Updated 10 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,011Updated this week
- A list of interesting genome browser and genome visualization programs☆935Updated last week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆811Updated last week
- Phylogenetic orthology inference for comparative genomics☆749Updated 5 months ago
- The second version of the Kraken taxonomic sequence classification system☆773Updated this week
- A fast and sensitive gapped read aligner☆705Updated 3 months ago
- ChIP-seq analysis notes from Ming Tang☆786Updated 8 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆820Updated 7 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆498Updated 4 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆852Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆606Updated 10 months ago
- A quality control analysis tool for high throughput sequencing data☆493Updated last year
- python module to plot beautiful and highly customizable genome browser tracks☆798Updated 9 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆1,924Updated this week
- Tools for handling Unique Molecular Identifiers in NGS data sets☆506Updated last month
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆816Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆609Updated 2 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆496Updated 3 weeks ago
- Bioinformatics one liners from Ming Tang☆483Updated 4 years ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆439Updated last week