lh3 / seqtkLinks
Toolkit for processing sequences in FASTA/Q formats
☆1,519Updated 7 months ago
Alternatives and similar repositories for seqtk
Users that are interested in seqtk are comparing it to the libraries listed below
Sorting:
- Trinity RNA-Seq de novo transcriptome assembly☆879Updated 10 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,017Updated 9 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,399Updated last week
- The next version of bwa-mem☆804Updated 2 months ago
- A quality control analysis tool for high throughput sequencing data☆561Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆751Updated 5 months ago
- A fast and sensitive gapped read aligner☆760Updated last month
- MACS -- Model-based Analysis of ChIP-Seq☆764Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,257Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,177Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆882Updated last week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆858Updated 7 months ago
- Phylogenetic orthology inference for comparative genomics☆822Updated 5 months ago
- The second version of the Kraken taxonomic sequence classification system☆856Updated 3 weeks ago
- Bioinformatics code libraries and scripts☆552Updated 5 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆884Updated 7 months ago
- SPAdes Genome Assembler☆887Updated 2 weeks ago
- SRA Tools☆1,289Updated last week
- Graph-based alignment (Hierarchical Graph FM index)☆518Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆682Updated 6 months ago
- Scripts to download genomes from the NCBI FTP servers☆1,053Updated 5 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆857Updated last year
- Near-optimal RNA-Seq quantification☆713Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,490Updated this week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 3 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,095Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,041Updated last week
- Rapid prokaryotic genome annotation☆946Updated 2 weeks ago
- Versatile open-source tool for microbiome analysis☆730Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆857Updated last year