Open-source usearch
☆136Aug 19, 2025Updated 9 months ago
Alternatives and similar repositories for usearch12
Users that are interested in usearch12 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Executable files for usearch versions 5 through 11, donated to the public domain☆24Jun 15, 2024Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 3 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆177Apr 6, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆303Feb 3, 2026Updated 3 months ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Kraken2 Server☆23Nov 24, 2025Updated 6 months ago
- Aligns short reads using dynamic seed size with strobemers☆197May 12, 2026Updated last week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆250May 13, 2026Updated last week
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Apr 27, 2026Updated 3 weeks ago
- SourceTracker2☆88Jul 10, 2024Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆219Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆187Mar 17, 2026Updated 2 months ago
- K-mer substring space decomposition☆44Sep 1, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆134Apr 27, 2026Updated 3 weeks ago
- ☆77Mar 10, 2024Updated 2 years ago
- ☆11Sep 27, 2024Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆215May 9, 2026Updated 2 weeks ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36May 14, 2026Updated last week
- Versatile open-source tool for microbiome analysis☆746May 4, 2026Updated 2 weeks ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated 2 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆598May 8, 2026Updated 2 weeks ago
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 8 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆642May 15, 2026Updated last week
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- ☆152Dec 30, 2025Updated 4 months ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Mar 15, 2026Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆27Feb 6, 2023Updated 3 years ago
- ☆30Updated this week
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆162Apr 25, 2026Updated 3 weeks ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- Download FASTQ files from SRA or ENA repositories.☆387May 16, 2026Updated last week