Alternatives and similar repositories for usearch12:

Users that are interested in usearch12 are comparing it to the libraries listed below

• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆69Updated last year
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆143Updated 8 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆102Updated last week
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆86Updated last year
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆214Updated last week
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆150Updated last month
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆136Updated last week
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆221Updated this week
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆105Updated this week
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆65Updated 7 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆91Updated this week
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆131Updated last week
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆115Updated last year
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆112Updated 3 months ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆181Updated 8 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆198Updated last week
• biobakery / graphlan
  High-quality circular representations of taxonomic and phylogenetic trees
  ☆95Updated 7 months ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆70Updated 2 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆89Updated last month
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆71Updated last month
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆159Updated this week
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆101Updated 3 years ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆77Updated last year
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆82Updated 6 years ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆79Updated 2 weeks ago
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆57Updated 11 months ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆151Updated 10 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆158Updated 2 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆146Updated last month
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆133Updated 3 months ago