rcedgar / usearch12
Open-source usearch
☆109Updated 9 months ago
Alternatives and similar repositories for usearch12:
Users that are interested in usearch12 are comparing it to the libraries listed below
- Pipeline for metabolic annotation of microbial genomes☆144Updated 3 weeks ago
- Supporting code for uncultivated gut virus manuscript☆70Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆221Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆116Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆204Updated 3 weeks ago
- fast phage annotation program☆161Updated 2 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆138Updated this week
- Systematic search of all known anti-phage systems.☆93Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆226Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆124Updated last month
- Metagenomic classification of long-read sequencing data☆79Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆113Updated last month
- Similarity networks of biosynthetic gene clusters☆104Updated this week
- A toolbox for comparative genomics.☆102Updated 3 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆92Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆193Updated 9 months ago
- Bioinformatics tool for Locus Visualisation☆96Updated 3 weeks ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆84Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆140Updated last week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆67Updated 8 months ago
- a tool for inferring species tree from sequencing reads☆148Updated last month
- Bioinformatics program inStrain☆163Updated 3 weeks ago
- MGnify genome analysis pipeline☆105Updated 2 weeks ago
- Download files from NCBI Entrez by accession☆121Updated 7 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆73Updated last month
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆202Updated this week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆72Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆91Updated last year
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆89Updated last year