rcedgar / usearch12
Open-source usearch
☆93Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for usearch12
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆109Updated last year
- Pipeline for metabolic annotation of microbial genomes☆140Updated 4 months ago
- Supporting code for uncultivated gut virus manuscript☆66Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆171Updated 5 months ago
- fast phage annotation program☆147Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆185Updated this week
- Metagenomic classification of long-read sequencing data☆58Updated this week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆80Updated last year
- geNomad: Identification of mobile genetic elements☆192Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆84Updated 11 months ago
- Similarity networks of biosynthetic gene clusters☆69Updated this week
- A toolbox for comparative genomics.☆97Updated 3 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 4 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆55Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆106Updated 2 weeks ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆144Updated last month
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- ☆119Updated 4 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated 2 months ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated 11 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆63Updated 10 months ago
- Find clustered hits from a BLAST search☆97Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆70Updated this week
- MGnify genome analysis pipeline☆100Updated this week
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆56Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆63Updated 2 weeks ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆178Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆143Updated this week
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year