merenlab / oligotypingLinks
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
☆40Updated last year
Alternatives and similar repositories for oligotyping
Users that are interested in oligotyping are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated 2 years ago
- Benchmark datasets for WGS analysis☆39Updated 6 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 7 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 6 months ago
- ☆23Updated 7 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last month
- ☆20Updated 8 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆33Updated 8 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Merge transcriptome assemblies☆31Updated 9 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Updated 9 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago