☆11Apr 4, 2023Updated 3 years ago
Alternatives and similar repositories for eNet
Users that are interested in eNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 3 years ago
- ☆10Mar 11, 2025Updated last year
- ChromDiff program as described in Yen and Kellis, Nature Communications 2015.☆14May 12, 2016Updated 10 years ago
- ☆31Sep 22, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- Importing and manipulating Hi-C data in R☆13Oct 5, 2026Updated 3 weeks ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆78Oct 21, 2023Updated 3 years ago
- ☆16Mar 2, 2023Updated 3 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆25Jul 19, 2024Updated 2 years ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆43Jul 6, 2023Updated 3 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆19Apr 24, 2020Updated 6 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆42Mar 20, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- Estimation of Promoter Activity from RNA-Seq data☆61Jul 14, 2025Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆38Apr 1, 2025Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆23Oct 16, 2026Updated 2 weeks ago
- ☆13Jul 26, 2026Updated 3 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆40Aug 22, 2024Updated 2 years ago
- LINE-1 transcription activates long-range gene expression☆14Jun 6, 2024Updated 2 years ago
- ☆40Aug 14, 2019Updated 7 years ago
- Script used to identify de novo variants from sequencing data.☆12Mar 2, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- A cross-platform method for chromatin contact normalization☆18Dec 29, 2025Updated 10 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆17May 16, 2023Updated 3 years ago
- ☆102Jun 16, 2026Updated 4 months ago
- Analysing Capture Seq Count Data☆14Jun 11, 2018Updated 8 years ago
- an attention mechanism-based deep neural network for protein lysine lactylation site prediction in Rice (Oryza sativa)☆11Jan 22, 2022Updated 4 years ago
- Using RNA-Seq data to improve microRNA target prediction accuracy in animals☆11Feb 15, 2026Updated 8 months ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- ☆71Apr 22, 2026Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆20Aug 12, 2025Updated last year
- pipeline and scripts for the analysis of scATAC-seq data via DBIT-seq☆14Mar 3, 2026Updated 7 months ago
- Public version of the AIDD consortium code base☆11Mar 25, 2025Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆29Sep 20, 2022Updated 4 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr …☆11Jan 20, 2022Updated 4 years ago