☆11Apr 4, 2023Updated 2 years ago
Alternatives and similar repositories for eNet
Users that are interested in eNet are comparing it to the libraries listed below
Sorting:
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 2 years ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 4 years ago
- Importing and manipulating Hi-C data in R☆11Jul 17, 2025Updated 7 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Oct 21, 2023Updated 2 years ago
- Script used to identify de novo variants from sequencing data.☆11Mar 2, 2017Updated 9 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆57Jul 14, 2025Updated 7 months ago
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Aug 22, 2024Updated last year
- ☆30Sep 22, 2023Updated 2 years ago
- ☆16Mar 2, 2023Updated 3 years ago
- ChromDiff program as described in Yen and Kellis, Nature Communications 2015.☆14May 12, 2016Updated 9 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated 11 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆22Aug 14, 2025Updated 6 months ago
- Functional Inference of Gene Regulation☆51Jul 5, 2024Updated last year
- Repo for downloading and storing OMIM data☆19Oct 6, 2016Updated 9 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- Chromosome polymer simulations and in silico capture experiments☆56Feb 18, 2026Updated last week
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20May 11, 2018Updated 7 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Jan 31, 2026Updated last month
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆22Jul 19, 2024Updated last year
- ☆62Dec 8, 2025Updated 2 months ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆25Dec 11, 2025Updated 2 months ago
- ☆30Jul 15, 2021Updated 4 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- ☆27Sep 2, 2021Updated 4 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Apr 22, 2024Updated last year
- Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool☆39Apr 2, 2024Updated last year