mvinyard / ArchR-h5ad
Parse ArchR arrow files to anndata h5ad
☆13Updated last year
Alternatives and similar repositories for ArchR-h5ad:
Users that are interested in ArchR-h5ad are comparing it to the libraries listed below
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- ☆36Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 weeks ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated last week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- ☆40Updated 3 years ago
- ☆30Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 5 months ago
- Python implementation of Gene Trajectory☆25Updated 6 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- cell type specific, trait-associated gene regulation☆21Updated 2 weeks ago
- ☆26Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Single cell omics biology annotations☆50Updated last week