mvinyard / ArchR-h5adView external linksLinks
Parse ArchR arrow files to anndata h5ad
☆16Dec 14, 2023Updated 2 years ago
Alternatives and similar repositories for ArchR-h5ad
Users that are interested in ArchR-h5ad are comparing it to the libraries listed below
Sorting:
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- ☆27Apr 15, 2025Updated 10 months ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated 9 months ago
- ☆32Oct 4, 2024Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Nov 6, 2025Updated 3 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Aug 22, 2024Updated last year
- A method for analyzing scATAC-seq experiments.☆34Jun 20, 2025Updated 7 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Dec 1, 2025Updated 2 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- ☆12Aug 30, 2025Updated 5 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- ☆11Feb 6, 2023Updated 3 years ago
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- Functional Inference of Gene Regulation☆51Jul 5, 2024Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 8 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Nov 1, 2025Updated 3 months ago
- scATAC-seq data analysis tools and papers☆128Jul 1, 2025Updated 7 months ago
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆15Jan 21, 2020Updated 6 years ago
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- ☆13Jul 5, 2019Updated 6 years ago
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆17Dec 19, 2025Updated last month
- ☆62Dec 8, 2025Updated 2 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- ☆15Nov 24, 2025Updated 2 months ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆41Apr 23, 2024Updated last year
- ☆59Sep 3, 2024Updated last year
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆18Aug 28, 2025Updated 5 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆492May 19, 2025Updated 8 months ago
- R package for specialised analysis of single cell data☆40Oct 14, 2022Updated 3 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated 10 months ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆55Jan 24, 2026Updated 3 weeks ago
- scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).☆26Feb 4, 2026Updated last week
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 8 months ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Jun 18, 2022Updated 3 years ago