mvinyard / ArchR-h5adLinks
Parse ArchR arrow files to anndata h5ad
☆15Updated 2 years ago
Alternatives and similar repositories for ArchR-h5ad
Users that are interested in ArchR-h5ad are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Updated 2 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 4 months ago
- ☆10Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- Python implementation of Gene Trajectory☆30Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Multi-resolution Variational Inference☆22Updated last month
- Whole mouse brain snATAC seq analysis☆28Updated 8 months ago
- ☆30Updated 8 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 3 months ago
- A set of files to do genomics analysis on python☆18Updated 7 months ago
- ☆13Updated 4 months ago
- ☆61Updated last month
- R implementation of GeneTrajectory☆69Updated last year
- A python package for chromVAR☆32Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated last month
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- ☆26Updated 2 years ago