A python package for chromVAR
☆36May 1, 2023Updated 3 years ago
Alternatives and similar repositories for pychromVAR
Users that are interested in pychromVAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of epigenetic data in Python☆15Oct 22, 2026Updated last week
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆37May 23, 2026Updated 5 months ago
- ☆14Nov 6, 2025Updated 11 months ago
- Package for the Navigo project: Generative Modeling of Mouse Embryogenesis for Fate and Disease Prediction☆19Jun 10, 2026Updated 4 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆70Oct 23, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- Single-cell epigenomics analysis tools☆329Sep 12, 2026Updated last month
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆88Sep 15, 2026Updated last month
- ☆14Jan 23, 2025Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆41Mar 27, 2025Updated last year
- Code for the analysis performed in the paper "Deep learning the cis-regulatory code of chromatin dynamics during cellular reprogramming" …☆18Oct 16, 2025Updated last year
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 3 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆53Mar 22, 2026Updated 7 months ago
- ☆13Aug 30, 2025Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆61Oct 19, 2026Updated last week
- ☆17Oct 22, 2026Updated last week
- ☆82Updated this week
- ☆27Apr 15, 2025Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Updated this week
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated 2 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆20Aug 12, 2025Updated last year
- ☆15Jul 17, 2023Updated 3 years ago
- ☆71Apr 22, 2026Updated 6 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Oct 15, 2026Updated 2 weeks ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆56Jun 9, 2026Updated 4 months ago
- ☆19Mar 24, 2023Updated 3 years ago
- ☆24Jul 3, 2019Updated 7 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆51Sep 1, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- muon is a multimodal omics Python framework☆279Oct 19, 2026Updated last week
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆29Feb 4, 2023Updated 3 years ago
- ☆17Sep 8, 2024Updated 2 years ago
- AlphaGenome PyTorch port☆163Sep 15, 2026Updated last month
- A tool for spatial omics single-modal clustering, multi-modal clustering, slice alignment, cross-modal alignment, multi-modal alignment, …☆24May 6, 2026Updated 5 months ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago