A python package for chromVAR
☆34May 1, 2023Updated 3 years ago
Alternatives and similar repositories for pychromVAR
Users that are interested in pychromVAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated last month
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 2 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Updated this week
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Aug 30, 2025Updated 10 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆56Jun 9, 2026Updated last month
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆82Jul 9, 2026Updated last week
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- Functional Inference of Gene Regulation☆54Jul 5, 2024Updated 2 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- ☆16Apr 7, 2026Updated 3 months ago
- ☆51Mar 22, 2026Updated 3 months ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Store collections of experimental data based on TileDB☆11Updated this week
- Single-cell epigenomics analysis tools☆323Jul 13, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆29Apr 13, 2026Updated 3 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆23Nov 8, 2025Updated 8 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆84Jun 9, 2022Updated 4 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Apr 1, 2026Updated 3 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Updated this week
- ☆23Jun 5, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated last year
- ☆11Updated this week
- generalized principal component analysis (GLM-PCA) implemented in python☆64Feb 1, 2021Updated 5 years ago
- ☆15Jan 9, 2022Updated 4 years ago
- An efficient tool for large-scale correlation network analysis☆15Dec 27, 2024Updated last year
- muon is a multimodal omics Python framework☆273Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆261Jan 16, 2026Updated 6 months ago
- The official repository for the ARSENAL model☆16Jul 3, 2026Updated 2 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated 2 months ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆14Oct 16, 2025Updated 9 months ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago