pinellolab / pychromVARLinks
A python package for chromVAR
☆31Updated 2 years ago
Alternatives and similar repositories for pychromVAR
Users that are interested in pychromVAR are comparing it to the libraries listed below
Sorting:
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- ☆36Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆31Updated 3 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- Toolkit for single-cell DNA methylation analysis.☆43Updated 2 weeks ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆31Updated 7 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆29Updated last month
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 9 months ago
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- ☆68Updated 5 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆18Updated 4 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆49Updated last week
- ☆26Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 10 months ago
- ☆56Updated 5 months ago