pinellolab / pychromVARLinks
A python package for chromVAR
☆31Updated 2 years ago
Alternatives and similar repositories for pychromVAR
Users that are interested in pychromVAR are comparing it to the libraries listed below
Sorting:
- A method for analyzing scATAC-seq experiments.☆34Updated 5 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆29Updated this week
- ☆37Updated last year
- Molecular interactions inference from single-cell multi-omics data☆29Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 7 months ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Toolkit for single-cell DNA methylation analysis.☆43Updated 2 weeks ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆29Updated 2 weeks ago
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated 2 months ago
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- pseudobulking on an AnnData object☆34Updated 8 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last week
- Information-based dimensionality reduction☆29Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- ☆69Updated 2 weeks ago
- ☆37Updated 9 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Single cell omics biology annotations☆50Updated 7 months ago
- ☆26Updated 7 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆34Updated 9 months ago