pinellolab / pychromVARLinks
A python package for chromVAR
☆30Updated 2 years ago
Alternatives and similar repositories for pychromVAR
Users that are interested in pychromVAR are comparing it to the libraries listed below
Sorting:
- A method for analyzing scATAC-seq experiments.☆34Updated 2 months ago
- ☆36Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last week
- Toolkit for single-cell DNA methylation analysis.☆42Updated last week
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆21Updated last year
- Molecular interactions inference from single-cell multi-omics data☆27Updated 3 weeks ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- ☆26Updated 5 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- ☆35Updated 6 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆94Updated this week
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- ☆55Updated 3 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 5 months ago
- ☆29Updated 6 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Information-based dimensionality reduction☆29Updated 9 months ago
- Pipeline to run scE2G☆27Updated last week
- Geometry-preserving random sampling☆89Updated 10 months ago