Alternatives and similar repositories for scScalpChromatin

Users that are interested in scScalpChromatin are comparing it to the libraries listed below

• gxiaolab / scAllele
  ☆39Updated 2 months ago
• UPSUTER / GEMLI
  ☆32Updated 9 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆55Updated 2 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆48Updated last year
• wenweixiong / MARVEL
  ☆51Updated last year
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 11 months ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 6 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆60Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• McGranahanLab / ImmuneLENS
  ☆15Updated 8 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆42Updated last week
• WanluLiuLab / scAtlasVAE
  ☆39Updated 4 months ago
• lkmklsmn / MitoTrace
  ☆18Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 7 months ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆38Updated 5 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆38Updated 2 years ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆28Updated 3 years ago
• xmuhuanglab / eNet
  ☆12Updated 2 years ago