Alternatives and similar repositories for scScalpChromatin

Users that are interested in scScalpChromatin are comparing it to the libraries listed below

• gxiaolab / scAllele
  ☆38Updated 3 weeks ago
• UPSUTER / GEMLI
  ☆32Updated 8 months ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 5 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆37Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated last month
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 10 months ago
• wenweixiong / MARVEL
  ☆51Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆36Updated 6 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 11 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 5 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆54Updated 2 years ago
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 3 years ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• snehamitra / SCARlink
  ☆59Updated 3 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 8 months ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆24Updated 3 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 9 months ago
• WanluLiuLab / scAtlasVAE
  ☆38Updated 3 months ago