Alternatives and similar repositories for PRINT

Users that are interested in PRINT are comparing it to the libraries listed below

• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆78Updated 2 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 11 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 5 months ago
• buenrostrolab / scPrinter
  ☆56Updated 2 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆80Updated 7 months ago
• snehamitra / SCARlink
  ☆59Updated this week
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆23Updated last year
• wenweixiong / MARVEL
  ☆52Updated last year
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆124Updated 2 weeks ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated this week
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆37Updated last year
• UPSUTER / GEMLI
  ☆32Updated 10 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 7 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• xmuhuanglab / eNet
  ☆12Updated 2 years ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆35Updated 4 years ago
• yal054 / epiformer
  ☆26Updated 7 months ago
• lhqing / cemba_data
  Mapping pipeline for snmC-seq based technologies.
  ☆20Updated 2 years ago
• nghiavtr / SCmut
  ☆34Updated 6 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆29Updated this week
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
  ☆29Updated 2 weeks ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆31Updated last month
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆29Updated last year
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆34Updated 8 months ago
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆44Updated this week
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year