Alternatives and similar repositories for scExtract

Users that are interested in scExtract are comparing it to the libraries listed below

• wenweixiong / MARVEL
  ☆49Updated last year
• McGranahanLab / TcellExTRECT
  ☆47Updated 6 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• JiaqiLiZju / Nvwa
  ☆35Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆86Updated last year
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆35Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆29Updated 9 months ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 10 months ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 3 years ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆53Updated 3 years ago
• cole-trapnell-lab / cicero-release
  ☆58Updated 11 months ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated 2 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated last month
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆46Updated last year
• McGranahanLab / ImmuneLENS
  ☆14Updated 5 months ago
• shiquan / PISA
  A collection of tools to process single-cell omics datasets.
  ☆48Updated 2 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆25Updated last year
• 10XGenomics / cellranger-atac
  ☆20Updated 4 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• aertslab / SCopeLoomR
  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…
  ☆42Updated 3 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago