Pinlyu3 / IReNA-v2Links
Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data
☆12Updated 3 years ago
Alternatives and similar repositories for IReNA-v2
Users that are interested in IReNA-v2 are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆46Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 7 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆10Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- ☆57Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- ☆50Updated 5 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- ☆58Updated last year
- ☆56Updated this week
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- analysis script for GBM single cell RNA seq data☆21Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago