TheHumphreysLab / plot1cell
☆105Updated 2 months ago
Alternatives and similar repositories for plot1cell:
Users that are interested in plot1cell are comparing it to the libraries listed below
- A R package for advanced single cell data viz☆66Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆55Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆102Updated last week
- ☆62Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆90Updated 3 weeks ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆55Updated last year
- Create stacked violin plot☆46Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- ☆66Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- ☆79Updated last year
- Analysis of cell-cell communication at single-cell resolution☆101Updated 7 months ago
- ☆105Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆103Updated 8 months ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 6 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆69Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated 2 weeks ago
- ☆60Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 weeks ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 8 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- The integration of single cell rank-based gene set enrichment analysis☆123Updated 9 months ago
- Single-cell disease relevance score (scDRS)☆127Updated 6 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆53Updated 4 months ago
- Methods to discover gene programs on single-cell data☆114Updated 2 weeks ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- A tool for semi-automatic cell type harmonization and integration☆104Updated last month