TheHumphreysLab / plot1cellLinks
☆120Updated 5 months ago
Alternatives and similar repositories for plot1cell
Users that are interested in plot1cell are comparing it to the libraries listed below
Sorting:
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆121Updated 2 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆64Updated last year
- ☆71Updated 3 years ago
- The integration of single cell rank-based gene set enrichment analysis☆144Updated 3 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Updated 9 months ago
- ☆75Updated 2 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆76Updated 8 months ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Updated last year
- ☆114Updated last year
- The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.☆134Updated 2 weeks ago
- ☆85Updated last year
- A R package for advanced single cell data viz☆73Updated 5 months ago
- ☆90Updated 5 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆74Updated 4 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆75Updated 5 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆69Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆88Updated last year
- Methods for decontamination of single cell data☆56Updated 11 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆68Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆132Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆39Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Updated 4 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆96Updated 4 years ago
- A tool for semi-automatic cell type harmonization and integration☆118Updated 3 months ago
- CUT&RUN and CUT&Tag data processing and analysis☆113Updated 11 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 9 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago