TheHumphreysLab / plot1cellLinks
☆120Updated 3 months ago
Alternatives and similar repositories for plot1cell
Users that are interested in plot1cell are comparing it to the libraries listed below
Sorting:
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆118Updated 2 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆112Updated 8 months ago
- ☆71Updated 3 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆62Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆80Updated last year
- ☆114Updated last year
- ☆89Updated 3 months ago
- ☆74Updated 2 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆74Updated 6 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 4 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆113Updated 9 months ago
- The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.☆127Updated last week
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- ☆64Updated 6 years ago
- A R package for advanced single cell data viz☆68Updated 3 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- collected resource for scRNA-seq analysis☆67Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Methods for decontamination of single cell data☆53Updated 10 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆130Updated last year
- ☆80Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆98Updated 4 years ago