Alternatives and similar repositories for tcma_code

Users that are interested in tcma_code are comparing it to the libraries listed below

• xiaolw95 / NetMoss
  ☆14Updated 3 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• YuLab-SMU / MMINP
  Microbe-Metabolite INteractions-based metabolic profiles Predictor
  ☆15Updated 2 years ago
• Asa12138 / pctax
  Professional Comprehensive Omics Data Analysis
  ☆20Updated 2 weeks ago
• HuaZou / bioinformatics_pipeline
  Bioinformatics Pipeline
  ☆13Updated 2 years ago
• dzhakparov / GeneSelectR
  ☆19Updated last year
• YuLab-SMU / clusterProfiler_protocol
  omics data analysis using clusterProfiler ;)
  ☆13Updated last year
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆20Updated 6 years ago
• jiaonall / CRC-multi-kingdom
  This is the supplementary code for CRC-multi-kingdom
  ☆17Updated 3 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 2 months ago
• Aufiero / circRNAprofiler
  ☆10Updated last month
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆29Updated 3 weeks ago
• ruppinlab / CSI-Microbes-analysis
  The code for running the analysis component of CSI-Microbe
  ☆12Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• grbot / 16SrRNA-hex-tutorial
  16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.
  ☆11Updated 4 years ago
• LironZa / MWAS
  ☆10Updated last year
• Core-Bioinformatics / bulkAnalyseR
  ☆28Updated last year
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆15Updated 10 months ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆17Updated 7 months ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• qsu123 / multi_class_diagnosis
  ☆18Updated 2 years ago
• guokai8 / richR
  Function Enrichment analysis and Network construction
  ☆12Updated last week
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆29Updated 6 months ago
• Asa12138 / pcutils
  Useful Utilities for Statistics and Visualization.
  ☆26Updated last month
• knightlab-analyses / mycobiome
  Pan-cancer mycobiome atlas
  ☆27Updated 2 years ago
• eudoraleer / HTCA
  HTCA Analysis Tools
  ☆6Updated 2 years ago
• fogellab / multiWGCNA
  an R package for deep mining gene co-expression networks in multi-trait expression data
  ☆19Updated last week