Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.
☆15Nov 26, 2023Updated 2 years ago
Alternatives and similar repositories for tcma_code
Users that are interested in tcma_code are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Feb 21, 2024Updated 2 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆16Mar 17, 2023Updated 3 years ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated 2 years ago
- ☆18Oct 13, 2023Updated 2 years ago
- ☆21Sep 1, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Batch effects removal for microbiome data via conditional quantile regression☆34Aug 23, 2022Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Pan-cancer mycobiome atlas☆32Oct 7, 2022Updated 3 years ago
- ☆92Sep 3, 2024Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆40Jan 30, 2024Updated 2 years ago
- ☆21Aug 20, 2024Updated last year
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆18Oct 15, 2021Updated 4 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Dec 8, 2022Updated 3 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- ☆37Nov 5, 2025Updated 7 months ago
- Code and analysis results for the CRC shotgun meta-analysis☆40Sep 28, 2022Updated 3 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆17Nov 7, 2019Updated 6 years ago
- ☆26Aug 10, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to predict microbial loads☆18Updated this week
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆48May 8, 2025Updated last year
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Updated this week
- ☆32Jan 4, 2025Updated last year
- ☆33Dec 2, 2021Updated 4 years ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial