abdohlman / tcma_code
Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.
☆12Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for tcma_code
- ☆14Updated 2 years ago
- ☆10Updated 3 weeks ago
- ☆19Updated 5 months ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Bioinformatics Pipeline☆12Updated 2 years ago
- Time-Course Multi-Omics data integration☆24Updated 7 months ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆13Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- ☆18Updated last year
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- ☆22Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆17Updated 5 years ago
- ☆14Updated 2 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 3 months ago
- ☆27Updated last year
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆18Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆23Updated last month
- RNA-seq analysis scripts☆15Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 3 months ago
- This is the supplementary code for CRC-multi-kingdom☆16Updated 3 years ago
- Network analysis for multi-omics☆13Updated 4 months ago
- Analysis and visualization of RNA-Seq results☆20Updated 2 weeks ago
- 🧬 Gene analysis toolkit based on R☆53Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- ☆23Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 6 months ago