abdohlman / tcma_codeLinks
Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.
☆12Updated last year
Alternatives and similar repositories for tcma_code
Users that are interested in tcma_code are comparing it to the libraries listed below
Sorting:
- ☆14Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- ☆12Updated last year
- Time-Course Multi-Omics data integration☆25Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- Bioinformatics Pipeline☆12Updated 2 years ago
- ☆18Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Professional Comprehensive Omics Data Analysis☆23Updated 3 months ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆18Updated 2 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 3 months ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Updated 4 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆33Updated 3 years ago
- ☆10Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 2 months ago
- ☆23Updated 4 years ago
- ☆11Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆32Updated last year
- RNA-seq analysis scripts☆15Updated 2 months ago
- Extract Sequence from Genome According to Annotation File☆37Updated 5 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated 3 months ago
- 🧬 Gene analysis toolkit based on R☆57Updated 8 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago