YuLab-SMU / ggsc
🧠Visualizing Single Cell and Spatial Transcriptomics
☆47Updated 4 months ago
Alternatives and similar repositories for ggsc:
Users that are interested in ggsc are comparing it to the libraries listed below
- 🧬 Gene analysis toolkit based on R☆56Updated 2 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Visualizing SingleCell data Using GGplot2☆31Updated 5 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆43Updated last year
- Identify and correct invalid gene symbols☆59Updated 4 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated 2 weeks ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 4 months ago
- An R package for visualising cell-cell interactions☆43Updated 7 months ago
- R package for analysing single cell data☆52Updated 2 years ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆17Updated 10 months ago
- An r package that works as a wrapper to homologene☆43Updated last year
- ☆20Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆27Updated last year
- R package for Flexible dot plots☆29Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 3 months ago
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated last month
- A General Framework for Consensus Partitioning☆61Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Easy and comprehensive biological network reconstruction and analysis☆27Updated 5 months ago
- Network construction Algorithm☆21Updated 6 months ago
- Toolkit for Single-Cell Velocity☆54Updated 2 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- Normalize CITEseq Data☆65Updated 9 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last year
- Collection of cell type reference datasets.☆50Updated 9 months ago
- Toolbox with R scripts☆38Updated 6 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆15Updated 4 months ago