YuLab-SMU / ggsc
🧠Visualizing Single Cell and Spatial Transcriptomics
☆46Updated 5 months ago
Alternatives and similar repositories for ggsc:
Users that are interested in ggsc are comparing it to the libraries listed below
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆56Updated 3 months ago
- ☆20Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Analysis and visualization of RNA-Seq results☆29Updated 3 months ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆17Updated 11 months ago
- An r package that works as a wrapper to homologene☆45Updated last year
- R package for Flexible dot plots☆29Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 5 months ago
- Visualizing SingleCell data Using GGplot2☆31Updated 6 months ago
- Toolbox with R scripts☆38Updated 6 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆49Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Collection of cell type reference datasets.☆51Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- R package containing the Cerebro application.☆40Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆27Updated last year
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆17Updated 5 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated 2 weeks ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆45Updated 3 weeks ago
- R package for analysing single cell data☆55Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 4 months ago
- An R package for visualising cell-cell interactions☆44Updated 8 months ago
- Normalize CITEseq Data☆65Updated 2 weeks ago
- workshop website on readthedocs☆19Updated 2 months ago
- An R package to analyze single-cell V(D)J data☆25Updated last year