buenrostrolab / FigRLinks
Functional Inference of Gene Regulation
☆49Updated last year
Alternatives and similar repositories for FigR
Users that are interested in FigR are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆79Updated 7 months ago
- scWGCNA☆61Updated 3 years ago
- ☆59Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- ☆41Updated 4 years ago
- ☆32Updated 10 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆24Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- ☆44Updated last week
- Inferring CNV data from single cell ATAC seq☆25Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated 3 weeks ago
- ☆52Updated last year
- ☆50Updated 5 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- R package IReNA☆28Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- ☆37Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago