Functional Inference of Gene Regulation
☆54Jul 5, 2024Updated 2 years ago
Alternatives and similar repositories for FigR
Users that are interested in FigR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package IReNA☆31Nov 13, 2024Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆39Aug 22, 2024Updated last year
- ☆68Apr 22, 2026Updated 2 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆29Sep 20, 2022Updated 3 years ago
- Multiome GRN inference.☆139Apr 10, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Jun 22, 2026Updated 2 weeks ago
- ☆10Mar 11, 2025Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆261Jan 16, 2026Updated 5 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 7 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆31Sep 22, 2023Updated 2 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Pipeline to run scE2G☆44Apr 17, 2026Updated 2 months ago
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆17Jan 1, 2026Updated 6 months ago
- Identifying external communication signals using single-cell transcriptomics data☆21Jun 10, 2024Updated 2 years ago
- ☆35Oct 4, 2024Updated last year
- ☆39Apr 16, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Apr 4, 2023Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆191Aug 12, 2025Updated 10 months ago
- Some NGS workflow created by snakemake☆14Jun 30, 2026Updated last week
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated 2 years ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 5 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated this week
- This is the alpha version of the CellOracle package☆472Apr 30, 2026Updated 2 months ago
- ☆13Apr 16, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆87Mar 20, 2025Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Jun 12, 2026Updated 3 weeks ago
- RcisTarget: Transcription factor binding motif enrichment☆49Mar 4, 2024Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago