Functional Inference of Gene Regulation
☆52Jul 5, 2024Updated last year
Alternatives and similar repositories for FigR
Users that are interested in FigR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package IReNA☆30Nov 13, 2024Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆39Aug 22, 2024Updated last year
- ☆62Dec 8, 2025Updated 4 months ago
- Multiome GRN inference.☆135Apr 10, 2026Updated last week
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 8, 2026Updated last week
- ☆10Mar 11, 2025Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆251Jan 16, 2026Updated 3 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 4 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆85Apr 21, 2025Updated 11 months ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆30Sep 22, 2023Updated 2 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- Pipeline to run scE2G☆40Updated this week
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆16Jan 1, 2026Updated 3 months ago
- Identifying external communication signals using single-cell transcriptomics data☆21Jun 10, 2024Updated last year
- ☆33Oct 4, 2024Updated last year
- ☆38Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Apr 4, 2023Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- Some NGS workflow created by snakemake☆14Jan 15, 2025Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated 11 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 2 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- This is the alpha version of the CellOracle package☆439Feb 3, 2026Updated 2 months ago
- ☆12Apr 16, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆86Mar 20, 2025Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Apr 10, 2026Updated last week
- End-guided RNA assembler☆15Dec 2, 2025Updated 4 months ago
- RcisTarget: Transcription factor binding motif enrichment☆49Mar 4, 2024Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago