Multi-slice Spatial Transcriptome Domain Analysis.
☆13Dec 13, 2024Updated last year
Alternatives and similar repositories for SpaDo
Users that are interested in SpaDo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 7, 2023Updated 2 years ago
- ☆10Jun 1, 2026Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 9 months ago
- ☆17Feb 18, 2025Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Jun 21, 2026Updated 2 months ago
- CONCERT predicts niche-aware perturbation responses in spatial transcriptomics☆24Nov 13, 2025Updated 9 months ago
- Supervised cell type identification for scATAC-seq data☆15Aug 23, 2023Updated 3 years ago
- ☆12May 24, 2024Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 3 months ago
- CAST package☆44Oct 26, 2024Updated last year
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated 2 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆27May 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- ☆46Jan 9, 2021Updated 5 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 2 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆183Jan 8, 2026Updated 7 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 11 months ago
- ☆12May 11, 2016Updated 10 years ago
- Image processing pipeline for spatial projects☆18Aug 3, 2023Updated 3 years ago
- a unified single-cell data integration framework by optimal transport☆39Aug 23, 2026Updated last week
- Spatially-aware quality control for spatial transcriptomics☆17Oct 22, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 5 months ago
- Python bindings for SingleR☆16Aug 14, 2026Updated 2 weeks ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆96Mar 26, 2026Updated 5 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 4 months ago
- ☆48Jun 1, 2026Updated 2 months ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 6 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆18Nov 24, 2024Updated last year