bm2-lab / SpaDoLinks
Multi-slice Spatial Transcriptome Domain Analysis.
☆12Updated 9 months ago
Alternatives and similar repositories for SpaDo
Users that are interested in SpaDo are comparing it to the libraries listed below
Sorting:
- ☆18Updated 3 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Spatial direct messaging detected by bivariate Moran☆30Updated 2 months ago
- ☆16Updated 10 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- R package for normalisation of spatial transcriptomics data☆13Updated 3 months ago
- ☆31Updated 7 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- scTM: A package for topic modelling in transcriptomics data☆22Updated last year
- CAST package☆40Updated 11 months ago
- Profile purification of single-cell spatial transcriptomics data☆20Updated last month
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆29Updated 2 months ago
- Spatial One☆28Updated 11 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆40Updated 7 months ago
- Camiel's scATAC-seq analysis pipeline☆12Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆36Updated 8 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 6 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Updated last week
- ☆13Updated 6 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 11 months ago
- ☆30Updated 5 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆12Updated 7 months ago
- ☆14Updated 4 months ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆26Updated last year