Multi-slice Spatial Transcriptome Domain Analysis.
☆13Dec 13, 2024Updated last year
Alternatives and similar repositories for SpaDo
Users that are interested in SpaDo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 7, 2023Updated 2 years ago
- Supervised cell type identification for scATAC-seq data☆15Aug 23, 2023Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 6 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- ☆17Feb 18, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated last year
- ☆11May 24, 2024Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21May 27, 2026Updated last week
- CAST package☆44Oct 26, 2024Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated last year
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- ☆43Jan 9, 2021Updated 5 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 8 months ago
- ☆12May 11, 2016Updated 10 years ago
- Image processing pipeline for spatial projects☆18Aug 3, 2023Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- a unified single-cell data integration framework by optimal transport☆37Oct 1, 2024Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 2 months ago
- ☆20May 12, 2026Updated 3 weeks ago
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 9 months ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spatial direct messaging detected by bivariate Moran☆32Jul 16, 2025Updated 10 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated 2 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 5 months ago
- ☆46Jun 1, 2026Updated last week
- ☆14Jan 25, 2023Updated 3 years ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- ☆18Nov 24, 2024Updated last year
- ☆27Jul 2, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆53Oct 9, 2025Updated 8 months ago
- ☆25Apr 22, 2026Updated last month
- ☆26May 16, 2025Updated last year
- ☆36Jan 23, 2024Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 11 months ago
- ☆100May 4, 2026Updated last month
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year