bm2-lab / SpaDo
Multi-slice Spatial Transcriptome Domain Analysis.
☆11Updated 4 months ago
Alternatives and similar repositories for SpaDo:
Users that are interested in SpaDo are comparing it to the libraries listed below
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆13Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 7 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- CAST package☆34Updated 6 months ago
- ☆17Updated 3 weeks ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 7 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆11Updated 7 months ago
- ☆11Updated 11 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- ☆29Updated 2 months ago
- ☆12Updated 3 months ago
- Scripts from the GBM cellular states paper☆18Updated 4 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated 3 weeks ago
- ☆24Updated 2 months ago
- Spatial One☆26Updated 6 months ago
- ☆27Updated this week
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated last month
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆18Updated last year
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- Publically accessible code for DIISCO method☆10Updated 6 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- ☆9Updated 10 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated last week
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆11Updated 2 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- Hierarchical Cell Annotation☆20Updated 5 months ago
- ☆14Updated 5 months ago
- Camiel's scATAC-seq analysis pipeline☆11Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago